Hb_001001_130

Information

Type -
Description -
Location Contig1001: 127565-128515
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12860g
description POPTRDRAFT_754981; hypothetical protein
nr
ID XP_002302439.1
description hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
swissprot
ID Q9FMZ0
description BRI1 kinase inhibitor 1 OS=Arabidopsis thaliana GN=BKI1 PE=1 SV=1
trembl
ID B9GNX0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s12860g PE=4 SV=1
Gene Ontology
ID GO:0005829
description bri1 kinase inhibitor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00229: 127391-128020 , PASA_asmbl_00230: 128334-128479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_130 0.0 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
2 Hb_007101_090 0.0628704359 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
3 Hb_052139_010 0.0753955561 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
4 Hb_001856_290 0.091922061 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
5 Hb_000135_080 0.0943853907 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
6 Hb_012528_040 0.0947527256 - - -
7 Hb_000858_050 0.100724537 - - kinase, putative [Ricinus communis]
8 Hb_001610_100 0.101197301 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_002010_010 0.1052358093 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_015807_020 0.1063719824 - - gibberellin 20-oxidase, putative [Ricinus communis]
11 Hb_000270_040 0.1064068434 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007122_010 0.1091710907 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
13 Hb_000645_270 0.1117319339 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
14 Hb_003947_020 0.1134372065 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
15 Hb_004542_030 0.114135475 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
16 Hb_004855_030 0.1141746856 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_000349_150 0.1157901274 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
18 Hb_000922_110 0.1172904475 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
19 Hb_005029_030 0.1175072016 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
20 Hb_004010_080 0.1187532058 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001001_130 Hb_001001_130 Hb_007101_090 Hb_007101_090 Hb_001001_130--Hb_007101_090 Hb_052139_010 Hb_052139_010 Hb_001001_130--Hb_052139_010 Hb_001856_290 Hb_001856_290 Hb_001001_130--Hb_001856_290 Hb_000135_080 Hb_000135_080 Hb_001001_130--Hb_000135_080 Hb_012528_040 Hb_012528_040 Hb_001001_130--Hb_012528_040 Hb_000858_050 Hb_000858_050 Hb_001001_130--Hb_000858_050 Hb_007101_090--Hb_052139_010 Hb_000645_270 Hb_000645_270 Hb_007101_090--Hb_000645_270 Hb_007101_090--Hb_001856_290 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_052139_010--Hb_001856_290 Hb_031194_020 Hb_031194_020 Hb_052139_010--Hb_031194_020 Hb_052139_010--Hb_000645_270 Hb_000000_090 Hb_000000_090 Hb_052139_010--Hb_000000_090 Hb_057716_010 Hb_057716_010 Hb_001856_290--Hb_057716_010 Hb_054865_040 Hb_054865_040 Hb_001856_290--Hb_054865_040 Hb_001856_290--Hb_031194_020 Hb_000476_030 Hb_000476_030 Hb_000135_080--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_000135_080--Hb_005678_030 Hb_000135_080--Hb_001856_290 Hb_000135_080--Hb_012528_040 Hb_000135_080--Hb_000858_050 Hb_161881_010 Hb_161881_010 Hb_012528_040--Hb_161881_010 Hb_000123_070 Hb_000123_070 Hb_012528_040--Hb_000123_070 Hb_012528_040--Hb_002010_010 Hb_014109_020 Hb_014109_020 Hb_012528_040--Hb_014109_020 Hb_015807_020 Hb_015807_020 Hb_000858_050--Hb_015807_020 Hb_000282_100 Hb_000282_100 Hb_000858_050--Hb_000282_100 Hb_000026_060 Hb_000026_060 Hb_000858_050--Hb_000026_060 Hb_004146_030 Hb_004146_030 Hb_000858_050--Hb_004146_030 Hb_005029_030 Hb_005029_030 Hb_000858_050--Hb_005029_030 Hb_001289_050 Hb_001289_050 Hb_000858_050--Hb_001289_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0294661 2.03072 19.3124 9.81175 0.0220702 0.183173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.269849 0.0848899 0 7.04137 194.21

CAGE analysis