Hb_001001_150

Information

Type -
Description -
Location Contig1001: 169994-179079
Sequence    

Annotation

kegg
ID rcu:RCOM_1590980
description hypothetical protein
nr
ID XP_002510240.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7E7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1590980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00232: 170226-174874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_146224_010 0.0695759291 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002641_130 0.0727272254 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
4 Hb_000035_170 0.0755112772 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
5 Hb_000573_060 0.0782372009 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
6 Hb_000473_110 0.0782382633 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
7 Hb_001318_070 0.0823489448 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
8 Hb_003645_060 0.0837302 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
9 Hb_005402_040 0.0867419046 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
10 Hb_000243_210 0.0873663782 - - protein with unknown function [Ricinus communis]
11 Hb_000313_120 0.0880459081 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
12 Hb_000563_130 0.0906582955 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
13 Hb_007894_160 0.0908497944 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
14 Hb_000395_070 0.0915710441 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
15 Hb_000099_040 0.0917777455 - - unnamed protein product [Coffea canephora]
16 Hb_000789_250 0.0929371803 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
17 Hb_002686_040 0.0937236294 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
18 Hb_005215_010 0.0949458448 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
19 Hb_000494_050 0.0971246705 - - cationic amino acid transporter, putative [Ricinus communis]
20 Hb_000671_070 0.0973593498 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]

Gene co-expression network

sample Hb_001001_150 Hb_001001_150 Hb_146224_010 Hb_146224_010 Hb_001001_150--Hb_146224_010 Hb_002641_130 Hb_002641_130 Hb_001001_150--Hb_002641_130 Hb_000035_170 Hb_000035_170 Hb_001001_150--Hb_000035_170 Hb_000573_060 Hb_000573_060 Hb_001001_150--Hb_000573_060 Hb_000473_110 Hb_000473_110 Hb_001001_150--Hb_000473_110 Hb_001318_070 Hb_001318_070 Hb_001001_150--Hb_001318_070 Hb_012490_090 Hb_012490_090 Hb_146224_010--Hb_012490_090 Hb_000313_120 Hb_000313_120 Hb_146224_010--Hb_000313_120 Hb_002260_050 Hb_002260_050 Hb_146224_010--Hb_002260_050 Hb_000115_160 Hb_000115_160 Hb_146224_010--Hb_000115_160 Hb_000215_140 Hb_000215_140 Hb_146224_010--Hb_000215_140 Hb_002641_130--Hb_000573_060 Hb_001244_150 Hb_001244_150 Hb_002641_130--Hb_001244_150 Hb_000563_130 Hb_000563_130 Hb_002641_130--Hb_000563_130 Hb_009486_080 Hb_009486_080 Hb_002641_130--Hb_009486_080 Hb_000086_150 Hb_000086_150 Hb_002641_130--Hb_000086_150 Hb_006501_090 Hb_006501_090 Hb_000035_170--Hb_006501_090 Hb_012053_080 Hb_012053_080 Hb_000035_170--Hb_012053_080 Hb_000082_070 Hb_000082_070 Hb_000035_170--Hb_000082_070 Hb_003645_060 Hb_003645_060 Hb_000035_170--Hb_003645_060 Hb_000035_170--Hb_000563_130 Hb_001655_030 Hb_001655_030 Hb_000035_170--Hb_001655_030 Hb_000573_060--Hb_001244_150 Hb_000573_060--Hb_000086_150 Hb_000260_560 Hb_000260_560 Hb_000573_060--Hb_000260_560 Hb_000573_060--Hb_009486_080 Hb_004079_060 Hb_004079_060 Hb_000473_110--Hb_004079_060 Hb_006420_040 Hb_006420_040 Hb_000473_110--Hb_006420_040 Hb_000441_120 Hb_000441_120 Hb_000473_110--Hb_000441_120 Hb_001814_030 Hb_001814_030 Hb_000473_110--Hb_001814_030 Hb_002350_010 Hb_002350_010 Hb_000473_110--Hb_002350_010 Hb_000731_270 Hb_000731_270 Hb_000473_110--Hb_000731_270 Hb_000243_210 Hb_000243_210 Hb_001318_070--Hb_000243_210 Hb_000879_040 Hb_000879_040 Hb_001318_070--Hb_000879_040 Hb_000099_040 Hb_000099_040 Hb_001318_070--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_001318_070--Hb_000174_060 Hb_001268_280 Hb_001268_280 Hb_001318_070--Hb_001268_280 Hb_002205_250 Hb_002205_250 Hb_001318_070--Hb_002205_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92603 6.23297 5.50794 3.83957 6.86545 4.49155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81021 1.87774 4.84174 6.10792 6.01066

CAGE analysis