Hb_001002_010

Information

Type -
Description -
Location Contig1002: 7808-8722
Sequence    

Annotation

kegg
ID rcu:RCOM_1000540
description hypothetical protein
nr
ID XP_002519225.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q1G3T1
description TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1
trembl
ID B9RZQ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000540 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mrna maturation factor mbb1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00240: 7932-8207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001002_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006663_120 0.0012043668 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000679_180 0.0015015363 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
4 Hb_007227_020 0.0019207756 - - -
5 Hb_002217_010 0.0049222208 - - Peroxiredoxin, putative [Ricinus communis]
6 Hb_000471_130 0.0058164932 - - conserved hypothetical protein [Ricinus communis]
7 Hb_090521_010 0.0082948583 - - Major allergen Pru ar, putative [Ricinus communis]
8 Hb_036116_010 0.0100054876 - - JHL22C18.10 [Jatropha curcas]
9 Hb_002007_030 0.0128929881 - - conserved hypothetical protein [Ricinus communis]
10 Hb_102179_020 0.0143048416 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
11 Hb_002157_110 0.0153708669 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
12 Hb_000397_180 0.015654549 - - -
13 Hb_004899_240 0.0184398328 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005333_090 0.0217338482 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
15 Hb_003038_020 0.022491841 - - unnamed protein product [Coffea canephora]
16 Hb_003687_060 0.0232178857 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000813_110 0.0235443142 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
18 Hb_005356_020 0.0269232234 - - glutaredoxin, grx, putative [Ricinus communis]
19 Hb_001552_010 0.0276519515 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000803_280 0.0292642807 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]

Gene co-expression network

sample Hb_001002_010 Hb_001002_010 Hb_006663_120 Hb_006663_120 Hb_001002_010--Hb_006663_120 Hb_000679_180 Hb_000679_180 Hb_001002_010--Hb_000679_180 Hb_007227_020 Hb_007227_020 Hb_001002_010--Hb_007227_020 Hb_002217_010 Hb_002217_010 Hb_001002_010--Hb_002217_010 Hb_000471_130 Hb_000471_130 Hb_001002_010--Hb_000471_130 Hb_090521_010 Hb_090521_010 Hb_001002_010--Hb_090521_010 Hb_006663_120--Hb_000679_180 Hb_006663_120--Hb_007227_020 Hb_006663_120--Hb_002217_010 Hb_006663_120--Hb_000471_130 Hb_006663_120--Hb_090521_010 Hb_000679_180--Hb_007227_020 Hb_000679_180--Hb_002217_010 Hb_000679_180--Hb_000471_130 Hb_000679_180--Hb_090521_010 Hb_007227_020--Hb_002217_010 Hb_007227_020--Hb_000471_130 Hb_007227_020--Hb_090521_010 Hb_002217_010--Hb_000471_130 Hb_002217_010--Hb_090521_010 Hb_036116_010 Hb_036116_010 Hb_002217_010--Hb_036116_010 Hb_000471_130--Hb_090521_010 Hb_000471_130--Hb_036116_010 Hb_090521_010--Hb_036116_010 Hb_002157_110 Hb_002157_110 Hb_090521_010--Hb_002157_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0917751 0.557919 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis