Hb_001002_020

Information

Type -
Description -
Location Contig1002: 10066-12642
Sequence    

Annotation

kegg
ID rcu:RCOM_1000550
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002519226.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SR05
description Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1
trembl
ID B9RZQ7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1000550 PE=3 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase anxur1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00241: 10271-10468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001002_020 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_054165_010 0.0166159992 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_005928_010 0.0245883833 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
4 Hb_000277_030 0.0337403401 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_136973_020 0.0574791517 - - -
6 Hb_003847_090 0.0744716855 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
7 Hb_006083_010 0.0764444791 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
8 Hb_064885_010 0.0823311852 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
9 Hb_046610_010 0.085247782 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000248_080 0.0867203247 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_173029_010 0.0952963959 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001410_040 0.1074877082 - - Protein ABIL2, putative [Ricinus communis]
13 Hb_004788_030 0.1095348842 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_116103_010 0.1138105095 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
15 Hb_000628_050 0.1140180271 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_009385_010 0.1143297589 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
17 Hb_000904_110 0.1184139424 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
18 Hb_021142_030 0.1215650904 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_172983_010 0.1215651012 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000668_220 0.1246992673 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]

Gene co-expression network

sample Hb_001002_020 Hb_001002_020 Hb_054165_010 Hb_054165_010 Hb_001002_020--Hb_054165_010 Hb_005928_010 Hb_005928_010 Hb_001002_020--Hb_005928_010 Hb_000277_030 Hb_000277_030 Hb_001002_020--Hb_000277_030 Hb_136973_020 Hb_136973_020 Hb_001002_020--Hb_136973_020 Hb_003847_090 Hb_003847_090 Hb_001002_020--Hb_003847_090 Hb_006083_010 Hb_006083_010 Hb_001002_020--Hb_006083_010 Hb_054165_010--Hb_005928_010 Hb_054165_010--Hb_000277_030 Hb_046610_010 Hb_046610_010 Hb_054165_010--Hb_046610_010 Hb_054165_010--Hb_006083_010 Hb_054165_010--Hb_136973_020 Hb_005928_010--Hb_000277_030 Hb_005928_010--Hb_136973_020 Hb_000248_080 Hb_000248_080 Hb_005928_010--Hb_000248_080 Hb_005928_010--Hb_003847_090 Hb_000277_030--Hb_136973_020 Hb_000277_030--Hb_003847_090 Hb_000277_030--Hb_006083_010 Hb_136973_020--Hb_000248_080 Hb_137862_020 Hb_137862_020 Hb_136973_020--Hb_137862_020 Hb_003847_090--Hb_006083_010 Hb_004788_030 Hb_004788_030 Hb_003847_090--Hb_004788_030 Hb_001410_040 Hb_001410_040 Hb_003847_090--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_003847_090--Hb_009385_010 Hb_006083_010--Hb_001410_040 Hb_006083_010--Hb_004788_030 Hb_006083_010--Hb_009385_010 Hb_008821_030 Hb_008821_030 Hb_006083_010--Hb_008821_030 Hb_021142_030 Hb_021142_030 Hb_006083_010--Hb_021142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0149141 0.0226203 0.0162049 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis