Hb_001002_030

Information

Type -
Description -
Location Contig1002: 25594-29374
Sequence    

Annotation

kegg
ID rcu:RCOM_1000570
description hypothetical protein
nr
ID XP_012084075.1
description PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
swissprot
ID Q67YM6
description Dirigent protein 11 OS=Arabidopsis thaliana GN=DIR11 PE=2 SV=1
trembl
ID B9RZQ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000570 PE=4 SV=1
Gene Ontology
ID GO:0051536
description 4fe-4s iron-sulfur binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00242: 28596-29682 , PASA_asmbl_00243: 28544-29682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001002_030 0.0 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
2 Hb_007416_270 0.0801304959 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
3 Hb_008695_210 0.0985601242 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
4 Hb_000865_060 0.1055148678 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
5 Hb_000907_080 0.1101236661 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
6 Hb_005532_060 0.1112216495 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
7 Hb_164926_030 0.1138372993 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
8 Hb_015198_020 0.1175282242 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011242_040 0.1203501147 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_006915_050 0.1215972164 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
11 Hb_002678_020 0.1231740024 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
12 Hb_000614_230 0.1240290339 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
13 Hb_189003_080 0.1251439319 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
14 Hb_000567_260 0.1265315438 - - BnaA09g41440D [Brassica napus]
15 Hb_000754_040 0.1285418499 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
16 Hb_001329_300 0.1296248552 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
17 Hb_002551_020 0.1297085428 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
18 Hb_000189_140 0.1314830812 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000457_150 0.1320193778 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
20 Hb_008695_100 0.1322095746 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001002_030 Hb_001002_030 Hb_007416_270 Hb_007416_270 Hb_001002_030--Hb_007416_270 Hb_008695_210 Hb_008695_210 Hb_001002_030--Hb_008695_210 Hb_000865_060 Hb_000865_060 Hb_001002_030--Hb_000865_060 Hb_000907_080 Hb_000907_080 Hb_001002_030--Hb_000907_080 Hb_005532_060 Hb_005532_060 Hb_001002_030--Hb_005532_060 Hb_164926_030 Hb_164926_030 Hb_001002_030--Hb_164926_030 Hb_000236_140 Hb_000236_140 Hb_007416_270--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007416_270--Hb_003687_100 Hb_007416_270--Hb_000865_060 Hb_000479_130 Hb_000479_130 Hb_007416_270--Hb_000479_130 Hb_007416_270--Hb_008695_210 Hb_000614_230 Hb_000614_230 Hb_008695_210--Hb_000614_230 Hb_006915_050 Hb_006915_050 Hb_008695_210--Hb_006915_050 Hb_008695_210--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_008695_210--Hb_189003_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040 Hb_002006_090 Hb_002006_090 Hb_008695_210--Hb_002006_090 Hb_001090_050 Hb_001090_050 Hb_000865_060--Hb_001090_050 Hb_005188_090 Hb_005188_090 Hb_000865_060--Hb_005188_090 Hb_011242_040 Hb_011242_040 Hb_000865_060--Hb_011242_040 Hb_168773_010 Hb_168773_010 Hb_000865_060--Hb_168773_010 Hb_000907_080--Hb_189003_080 Hb_000907_080--Hb_006915_050 Hb_000001_140 Hb_000001_140 Hb_000907_080--Hb_000001_140 Hb_000409_020 Hb_000409_020 Hb_000907_080--Hb_000409_020 Hb_000898_040 Hb_000898_040 Hb_000907_080--Hb_000898_040 Hb_000457_150 Hb_000457_150 Hb_005532_060--Hb_000457_150 Hb_178968_110 Hb_178968_110 Hb_005532_060--Hb_178968_110 Hb_055062_030 Hb_055062_030 Hb_005532_060--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_005532_060--Hb_003266_130 Hb_000223_150 Hb_000223_150 Hb_005532_060--Hb_000223_150 Hb_005488_010 Hb_005488_010 Hb_005532_060--Hb_005488_010 Hb_000111_360 Hb_000111_360 Hb_164926_030--Hb_000111_360 Hb_007672_050 Hb_007672_050 Hb_164926_030--Hb_007672_050 Hb_002496_050 Hb_002496_050 Hb_164926_030--Hb_002496_050 Hb_164926_030--Hb_006915_050 Hb_164926_030--Hb_000754_040 Hb_000630_070 Hb_000630_070 Hb_164926_030--Hb_000630_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.936898 0.73222 0.41575 0.225548 0.894083 1.7784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81931 1.18949 2.81984 0.554084 1.06136

CAGE analysis