Hb_001002_040

Information

Type -
Description -
Location Contig1002: 40042-46030
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10480g
description POPTRDRAFT_656642; subunit B of the trimeric enzyme ATP Citrate lyase family protein
nr
ID XP_012453338.1
description PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]
swissprot
ID Q93VT8
description ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1
trembl
ID A0A0D2Q010
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G030200 PE=4 SV=1
Gene Ontology
ID GO:0003878
description atp-citrate synthase beta chain protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00244: 40160-45827 , PASA_asmbl_00245: 40160-46095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001002_040 0.0 - - PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]
2 Hb_000529_160 0.1192922159 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
3 Hb_005271_170 0.1221801549 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
4 Hb_002301_280 0.135081362 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
5 Hb_000365_310 0.1360028438 - - auxin:hydrogen symporter, putative [Ricinus communis]
6 Hb_000179_170 0.1377251963 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
7 Hb_009558_020 0.1392669657 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
8 Hb_002112_040 0.1397062251 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
9 Hb_000028_050 0.1402260397 - - aldose-1-epimerase, putative [Ricinus communis]
10 Hb_002716_150 0.1427060531 - - starch synthase isoform I [Manihot esculenta]
11 Hb_000705_260 0.1444320309 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003453_010 0.1450964295 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000268_020 0.1456552483 - - conserved hypothetical protein [Ricinus communis]
14 Hb_022137_060 0.1463476425 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
15 Hb_006788_070 0.1473180231 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
16 Hb_002400_220 0.1477890596 - - Vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_004143_110 0.1487419413 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
18 Hb_023988_020 0.149714868 - - PREDICTED: transmembrane protein 19 [Prunus mume]
19 Hb_001329_230 0.1500531621 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
20 Hb_010381_120 0.1508166979 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]

Gene co-expression network

sample Hb_001002_040 Hb_001002_040 Hb_000529_160 Hb_000529_160 Hb_001002_040--Hb_000529_160 Hb_005271_170 Hb_005271_170 Hb_001002_040--Hb_005271_170 Hb_002301_280 Hb_002301_280 Hb_001002_040--Hb_002301_280 Hb_000365_310 Hb_000365_310 Hb_001002_040--Hb_000365_310 Hb_000179_170 Hb_000179_170 Hb_001002_040--Hb_000179_170 Hb_009558_020 Hb_009558_020 Hb_001002_040--Hb_009558_020 Hb_000529_160--Hb_000365_310 Hb_000299_040 Hb_000299_040 Hb_000529_160--Hb_000299_040 Hb_010120_030 Hb_010120_030 Hb_000529_160--Hb_010120_030 Hb_000529_160--Hb_000179_170 Hb_076787_010 Hb_076787_010 Hb_000529_160--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_000529_160--Hb_022137_060 Hb_001047_010 Hb_001047_010 Hb_005271_170--Hb_001047_010 Hb_000184_040 Hb_000184_040 Hb_005271_170--Hb_000184_040 Hb_023988_020 Hb_023988_020 Hb_005271_170--Hb_023988_020 Hb_003453_010 Hb_003453_010 Hb_005271_170--Hb_003453_010 Hb_002400_220 Hb_002400_220 Hb_005271_170--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_005271_170--Hb_001269_150 Hb_002272_260 Hb_002272_260 Hb_002301_280--Hb_002272_260 Hb_005389_150 Hb_005389_150 Hb_002301_280--Hb_005389_150 Hb_137403_010 Hb_137403_010 Hb_002301_280--Hb_137403_010 Hb_002107_160 Hb_002107_160 Hb_002301_280--Hb_002107_160 Hb_007101_100 Hb_007101_100 Hb_002301_280--Hb_007101_100 Hb_001009_040 Hb_001009_040 Hb_002301_280--Hb_001009_040 Hb_000365_310--Hb_010120_030 Hb_002112_040 Hb_002112_040 Hb_000365_310--Hb_002112_040 Hb_000363_500 Hb_000363_500 Hb_000365_310--Hb_000363_500 Hb_002616_050 Hb_002616_050 Hb_000365_310--Hb_002616_050 Hb_001998_230 Hb_001998_230 Hb_000365_310--Hb_001998_230 Hb_000179_170--Hb_076787_010 Hb_000179_170--Hb_022137_060 Hb_000179_170--Hb_002400_220 Hb_150360_030 Hb_150360_030 Hb_000179_170--Hb_150360_030 Hb_001135_050 Hb_001135_050 Hb_000179_170--Hb_001135_050 Hb_000175_070 Hb_000175_070 Hb_009558_020--Hb_000175_070 Hb_006788_070 Hb_006788_070 Hb_009558_020--Hb_006788_070 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_009558_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.255 10.859 16.9421 95.3496 144.868 218.186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
256.358 92.3937 73.9341 33.6726 56.8502

CAGE analysis