Hb_001004_050

Information

Type -
Description -
Location Contig1004: 115744-118677
Sequence    

Annotation

kegg
ID pmum:103335231
description uncharacterized LOC103335231
nr
ID XP_008236463.1
description PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5WQH4
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018217mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00279: 118078-118466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_050 0.0 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
2 Hb_009979_010 0.171146972 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_002447_160 0.2077943707 - - -
4 Hb_183192_010 0.2211229585 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
5 Hb_001141_200 0.222668808 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
6 Hb_004021_090 0.223280389 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
7 Hb_096473_010 0.2389087483 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_004495_010 0.2481266254 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
9 Hb_007163_080 0.2495783333 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
10 Hb_001628_020 0.2499304698 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_002874_210 0.2511896464 - - conserved hypothetical protein [Ricinus communis]
12 Hb_065755_020 0.2569512388 - - choline monooxygenase, putative [Ricinus communis]
13 Hb_001369_560 0.2579622043 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
14 Hb_010423_010 0.2599908743 - - -
15 Hb_012022_020 0.2600459866 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
16 Hb_000108_040 0.2613007873 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
17 Hb_000787_010 0.2635726841 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
18 Hb_003751_100 0.2659293015 - - Amino acid permease 2 [Glycine soja]
19 Hb_002095_030 0.2698154181 - - hypothetical protein MIMGU_mgv1a021906mg, partial [Erythranthe guttata]
20 Hb_001846_030 0.271047181 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001004_050 Hb_001004_050 Hb_009979_010 Hb_009979_010 Hb_001004_050--Hb_009979_010 Hb_002447_160 Hb_002447_160 Hb_001004_050--Hb_002447_160 Hb_183192_010 Hb_183192_010 Hb_001004_050--Hb_183192_010 Hb_001141_200 Hb_001141_200 Hb_001004_050--Hb_001141_200 Hb_004021_090 Hb_004021_090 Hb_001004_050--Hb_004021_090 Hb_096473_010 Hb_096473_010 Hb_001004_050--Hb_096473_010 Hb_009979_010--Hb_183192_010 Hb_012022_020 Hb_012022_020 Hb_009979_010--Hb_012022_020 Hb_009979_010--Hb_004021_090 Hb_001628_020 Hb_001628_020 Hb_009979_010--Hb_001628_020 Hb_009979_010--Hb_001141_200 Hb_003768_060 Hb_003768_060 Hb_002447_160--Hb_003768_060 Hb_002631_220 Hb_002631_220 Hb_002447_160--Hb_002631_220 Hb_059481_010 Hb_059481_010 Hb_002447_160--Hb_059481_010 Hb_000787_010 Hb_000787_010 Hb_002447_160--Hb_000787_010 Hb_002447_160--Hb_004021_090 Hb_004495_010 Hb_004495_010 Hb_183192_010--Hb_004495_010 Hb_183192_010--Hb_001628_020 Hb_001369_670 Hb_001369_670 Hb_183192_010--Hb_001369_670 Hb_029689_010 Hb_029689_010 Hb_183192_010--Hb_029689_010 Hb_183192_010--Hb_012022_020 Hb_001141_200--Hb_001628_020 Hb_006395_020 Hb_006395_020 Hb_001141_200--Hb_006395_020 Hb_012404_050 Hb_012404_050 Hb_001141_200--Hb_012404_050 Hb_043522_010 Hb_043522_010 Hb_001141_200--Hb_043522_010 Hb_158111_010 Hb_158111_010 Hb_001141_200--Hb_158111_010 Hb_000819_020 Hb_000819_020 Hb_001141_200--Hb_000819_020 Hb_001486_210 Hb_001486_210 Hb_004021_090--Hb_001486_210 Hb_004021_090--Hb_000787_010 Hb_028639_040 Hb_028639_040 Hb_004021_090--Hb_028639_040 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030 Hb_010423_010 Hb_010423_010 Hb_096473_010--Hb_010423_010 Hb_000108_040 Hb_000108_040 Hb_096473_010--Hb_000108_040 Hb_000197_170 Hb_000197_170 Hb_096473_010--Hb_000197_170 Hb_022593_030 Hb_022593_030 Hb_096473_010--Hb_022593_030 Hb_001369_560 Hb_001369_560 Hb_096473_010--Hb_001369_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0105712 0.0279516 0.031818 0.00756991 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00752777 0

CAGE analysis