Hb_001004_060

Information

Type -
Description -
Location Contig1004: 138188-147355
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14110g
description POPTRDRAFT_572866; hypothetical protein
nr
ID XP_012067364.1
description PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26882 PE=4 SV=1
Gene Ontology
ID GO:0031011
description nuclear factor kappa-b-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00280: 138335-139970 , PASA_asmbl_00281: 143258-143446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_060 0.0 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
2 Hb_000329_710 0.0503717531 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
3 Hb_000792_010 0.0580746717 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
4 Hb_000327_270 0.0596118336 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
5 Hb_001999_290 0.0596280638 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
6 Hb_001205_230 0.0605353945 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
7 Hb_005736_020 0.0614495903 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
8 Hb_002518_260 0.0614525137 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
9 Hb_000590_050 0.0616587783 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
10 Hb_021443_040 0.0624141111 - - acc synthase, putative [Ricinus communis]
11 Hb_003494_020 0.0655823572 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
12 Hb_009270_020 0.0657749015 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
13 Hb_004225_050 0.0666851533 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
14 Hb_002732_040 0.0683014961 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
15 Hb_003504_030 0.0688225626 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
16 Hb_002218_090 0.0689865753 - - Poly(rC)-binding protein, putative [Ricinus communis]
17 Hb_001008_120 0.069209263 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
18 Hb_000343_250 0.0698350135 - - PREDICTED: protein CASC3 [Jatropha curcas]
19 Hb_002263_020 0.0699472208 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_003168_110 0.0704299616 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001004_060 Hb_001004_060 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020 Hb_000329_710--Hb_000792_010 Hb_011386_010 Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_002518_260 Hb_002518_260 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110 Hb_000792_010--Hb_002518_260 Hb_000028_480 Hb_000028_480 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_000792_010--Hb_011386_010 Hb_000590_050 Hb_000590_050 Hb_000327_270--Hb_000590_050 Hb_003680_120 Hb_003680_120 Hb_000327_270--Hb_003680_120 Hb_003504_030 Hb_003504_030 Hb_000327_270--Hb_003504_030 Hb_000708_030 Hb_000708_030 Hb_000327_270--Hb_000708_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_001999_290--Hb_005736_020 Hb_062226_070 Hb_062226_070 Hb_001999_290--Hb_062226_070 Hb_027346_010 Hb_027346_010 Hb_001205_230--Hb_027346_010 Hb_000281_090 Hb_000281_090 Hb_001205_230--Hb_000281_090 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_009486_060 Hb_009486_060 Hb_001205_230--Hb_009486_060 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_005736_020--Hb_001157_240 Hb_001008_120 Hb_001008_120 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91917 9.75684 5.24791 6.14485 7.23053 8.76169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.57386 6.72087 8.67512 7.80846 10.7209

CAGE analysis