Hb_001004_080

Information

Type -
Description -
Location Contig1004: 197636-205763
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14130g
description POPTRDRAFT_834913; hypothetical protein
nr
ID XP_002320422.2
description hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IA68
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s14130g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00286: 198797-199797 , PASA_asmbl_00287: 198797-201394 , PASA_asmbl_00288: 201417-203859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_080 0.0 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
2 Hb_001584_130 0.0725473628 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
3 Hb_012339_010 0.1415147949 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009913_040 0.1557225056 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
5 Hb_003994_300 0.1569503327 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000445_150 0.1579908415 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
7 Hb_011310_040 0.1632326608 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
8 Hb_003647_020 0.1673192778 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
9 Hb_000096_190 0.1682129411 - - unknown [Lotus japonicus]
10 Hb_000556_010 0.1686963511 - - glycerate dehydrogenase, putative [Ricinus communis]
11 Hb_000962_070 0.1699311222 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_006634_110 0.1711376127 - - BnaC04g40780D [Brassica napus]
13 Hb_002157_270 0.1748017957 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
14 Hb_001049_150 0.1769010242 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
15 Hb_002182_020 0.178243391 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_000300_480 0.1800960917 - - hypothetical protein RCOM_1321910 [Ricinus communis]
17 Hb_001096_130 0.1801034562 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas]
18 Hb_011926_040 0.181583289 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_001864_080 0.1821571196 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
20 Hb_000671_130 0.1838341626 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001004_080 Hb_001004_080 Hb_001584_130 Hb_001584_130 Hb_001004_080--Hb_001584_130 Hb_012339_010 Hb_012339_010 Hb_001004_080--Hb_012339_010 Hb_009913_040 Hb_009913_040 Hb_001004_080--Hb_009913_040 Hb_003994_300 Hb_003994_300 Hb_001004_080--Hb_003994_300 Hb_000445_150 Hb_000445_150 Hb_001004_080--Hb_000445_150 Hb_011310_040 Hb_011310_040 Hb_001004_080--Hb_011310_040 Hb_001584_130--Hb_000445_150 Hb_003647_020 Hb_003647_020 Hb_001584_130--Hb_003647_020 Hb_001584_130--Hb_012339_010 Hb_001049_150 Hb_001049_150 Hb_001584_130--Hb_001049_150 Hb_001584_130--Hb_003994_300 Hb_000665_190 Hb_000665_190 Hb_012339_010--Hb_000665_190 Hb_011926_040 Hb_011926_040 Hb_012339_010--Hb_011926_040 Hb_012339_010--Hb_003994_300 Hb_012339_010--Hb_001049_150 Hb_000399_060 Hb_000399_060 Hb_012339_010--Hb_000399_060 Hb_002174_040 Hb_002174_040 Hb_012339_010--Hb_002174_040 Hb_009913_040--Hb_011926_040 Hb_000173_060 Hb_000173_060 Hb_009913_040--Hb_000173_060 Hb_004306_110 Hb_004306_110 Hb_009913_040--Hb_004306_110 Hb_002164_020 Hb_002164_020 Hb_009913_040--Hb_002164_020 Hb_000139_300 Hb_000139_300 Hb_009913_040--Hb_000139_300 Hb_008025_010 Hb_008025_010 Hb_009913_040--Hb_008025_010 Hb_003994_300--Hb_000665_190 Hb_027445_030 Hb_027445_030 Hb_003994_300--Hb_027445_030 Hb_007477_050 Hb_007477_050 Hb_003994_300--Hb_007477_050 Hb_003746_010 Hb_003746_010 Hb_003994_300--Hb_003746_010 Hb_003994_300--Hb_001049_150 Hb_003994_300--Hb_000399_060 Hb_002596_080 Hb_002596_080 Hb_000445_150--Hb_002596_080 Hb_000417_170 Hb_000417_170 Hb_000445_150--Hb_000417_170 Hb_000445_150--Hb_003994_300 Hb_002157_270 Hb_002157_270 Hb_000445_150--Hb_002157_270 Hb_000445_150--Hb_011310_040 Hb_011310_040--Hb_002596_080 Hb_011310_040--Hb_000139_300 Hb_011310_040--Hb_002157_270 Hb_003226_250 Hb_003226_250 Hb_011310_040--Hb_003226_250 Hb_011310_040--Hb_002164_020 Hb_011310_040--Hb_004306_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.407509 0.172998 1.60179 5.4937 0.806161 0.805328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.901539 1.06374 0.479513 0.193723 2.80055

CAGE analysis