Hb_001004_100

Information

Type -
Description -
Location Contig1004: 226133-229294
Sequence    

Annotation

kegg
ID rcu:RCOM_1444980
description ATP binding protein, putative (EC:1.3.1.74 2.7.11.22)
nr
ID XP_002512822.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9S7I6
description LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=2 SV=1
trembl
ID B9RGW3
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1444980 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00290: 225355-226290 , PASA_asmbl_00291: 226439-227173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_100 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001123_010 0.1392735524 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012753_190 0.1404322627 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
4 Hb_158092_060 0.1508179241 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
5 Hb_029904_010 0.1655301211 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
6 Hb_002849_150 0.1725091079 - - hypothetical protein JCGZ_14367 [Jatropha curcas]
7 Hb_000653_010 0.1734500788 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
8 Hb_000922_010 0.1829835696 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
9 Hb_006141_030 0.1876424856 - - -
10 Hb_009545_010 0.1883511351 transcription factor TF Family: GNAT Acetyltransferase [Medicago truncatula]
11 Hb_107201_010 0.1889907704 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_000453_240 0.1946271958 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
13 Hb_000138_020 0.2019773794 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
14 Hb_001504_220 0.2071446575 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_011200_020 0.208559084 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_000753_250 0.2085592181 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
17 Hb_002835_350 0.2114382157 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
18 Hb_032225_040 0.2133057873 - - -
19 Hb_000471_080 0.2148250888 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
20 Hb_012553_020 0.2177427155 - - hypothetical protein JCGZ_09282 [Jatropha curcas]

Gene co-expression network

sample Hb_001004_100 Hb_001004_100 Hb_001123_010 Hb_001123_010 Hb_001004_100--Hb_001123_010 Hb_012753_190 Hb_012753_190 Hb_001004_100--Hb_012753_190 Hb_158092_060 Hb_158092_060 Hb_001004_100--Hb_158092_060 Hb_029904_010 Hb_029904_010 Hb_001004_100--Hb_029904_010 Hb_002849_150 Hb_002849_150 Hb_001004_100--Hb_002849_150 Hb_000653_010 Hb_000653_010 Hb_001004_100--Hb_000653_010 Hb_000138_020 Hb_000138_020 Hb_001123_010--Hb_000138_020 Hb_006141_030 Hb_006141_030 Hb_001123_010--Hb_006141_030 Hb_000453_240 Hb_000453_240 Hb_001123_010--Hb_000453_240 Hb_002026_080 Hb_002026_080 Hb_001123_010--Hb_002026_080 Hb_001123_010--Hb_012753_190 Hb_012753_190--Hb_000653_010 Hb_012753_190--Hb_006141_030 Hb_007101_210 Hb_007101_210 Hb_012753_190--Hb_007101_210 Hb_000230_230 Hb_000230_230 Hb_012753_190--Hb_000230_230 Hb_001268_330 Hb_001268_330 Hb_012753_190--Hb_001268_330 Hb_000675_060 Hb_000675_060 Hb_158092_060--Hb_000675_060 Hb_000471_080 Hb_000471_080 Hb_158092_060--Hb_000471_080 Hb_000922_010 Hb_000922_010 Hb_158092_060--Hb_000922_010 Hb_009545_010 Hb_009545_010 Hb_158092_060--Hb_009545_010 Hb_002471_260 Hb_002471_260 Hb_158092_060--Hb_002471_260 Hb_029904_010--Hb_000453_240 Hb_029904_010--Hb_001123_010 Hb_003517_010 Hb_003517_010 Hb_029904_010--Hb_003517_010 Hb_001776_190 Hb_001776_190 Hb_029904_010--Hb_001776_190 Hb_000061_090 Hb_000061_090 Hb_029904_010--Hb_000061_090 Hb_107201_010 Hb_107201_010 Hb_002849_150--Hb_107201_010 Hb_000135_050 Hb_000135_050 Hb_002849_150--Hb_000135_050 Hb_002849_150--Hb_000922_010 Hb_002849_150--Hb_012753_190 Hb_029510_110 Hb_029510_110 Hb_002849_150--Hb_029510_110 Hb_008066_060 Hb_008066_060 Hb_000653_010--Hb_008066_060 Hb_130563_010 Hb_130563_010 Hb_000653_010--Hb_130563_010 Hb_000836_480 Hb_000836_480 Hb_000653_010--Hb_000836_480 Hb_008226_020 Hb_008226_020 Hb_000653_010--Hb_008226_020 Hb_000653_010--Hb_000138_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106889 0.825091 0.865686 1.8164 0.00566458 0.0279586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.329363 0.77756 1.13719 10.2813 1.89118

CAGE analysis