Hb_001004_130

Information

Type -
Description -
Location Contig1004: 276403-278074
Sequence    

Annotation

kegg
ID tcc:TCM_017370
description Chalcone and stilbene synthase family protein
nr
ID XP_012067379.1
description PREDICTED: chalcone synthase 3 [Jatropha curcas]
swissprot
ID P51075
description Chalcone synthase OS=Betula pendula GN=CHS PE=2 SV=2
trembl
ID A0A067L095
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26889 PE=3 SV=1
Gene Ontology
ID GO:0005634
description chalcone synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00297: 276284-278090
cDNA
(Sanger)
(ID:Location)		 034_N07.ab1: 277021-278090 , 050_I06.ab1: 277148-278090

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_130 0.0 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
2 Hb_000844_090 0.0801570984 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
3 Hb_008376_020 0.0862300299 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
4 Hb_006573_250 0.091450106 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
5 Hb_079394_010 0.1023691457 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_001005_210 0.1054245583 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
7 Hb_001300_140 0.1118240191 - - -
8 Hb_006916_020 0.1128589712 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
9 Hb_005333_210 0.114481346 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
10 Hb_032631_080 0.1174085709 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
11 Hb_000609_020 0.1279754825 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
12 Hb_001597_110 0.1307584646 - - -
13 Hb_000847_120 0.1315104394 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
14 Hb_000075_030 0.1376872043 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
15 Hb_032223_020 0.1398124758 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000753_180 0.1400607226 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
17 Hb_000457_130 0.1405735272 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
18 Hb_000566_110 0.1417155768 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
19 Hb_004586_110 0.1431764515 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_000836_260 0.1470378679 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_001004_130 Hb_001004_130 Hb_000844_090 Hb_000844_090 Hb_001004_130--Hb_000844_090 Hb_008376_020 Hb_008376_020 Hb_001004_130--Hb_008376_020 Hb_006573_250 Hb_006573_250 Hb_001004_130--Hb_006573_250 Hb_079394_010 Hb_079394_010 Hb_001004_130--Hb_079394_010 Hb_001005_210 Hb_001005_210 Hb_001004_130--Hb_001005_210 Hb_001300_140 Hb_001300_140 Hb_001004_130--Hb_001300_140 Hb_000844_090--Hb_001300_140 Hb_011440_010 Hb_011440_010 Hb_000844_090--Hb_011440_010 Hb_000844_090--Hb_001005_210 Hb_005333_210 Hb_005333_210 Hb_000844_090--Hb_005333_210 Hb_004586_110 Hb_004586_110 Hb_000844_090--Hb_004586_110 Hb_000609_020 Hb_000609_020 Hb_008376_020--Hb_000609_020 Hb_000847_120 Hb_000847_120 Hb_008376_020--Hb_000847_120 Hb_000000_200 Hb_000000_200 Hb_008376_020--Hb_000000_200 Hb_000645_250 Hb_000645_250 Hb_008376_020--Hb_000645_250 Hb_008376_020--Hb_006573_250 Hb_178703_010 Hb_178703_010 Hb_006573_250--Hb_178703_010 Hb_001597_110 Hb_001597_110 Hb_006573_250--Hb_001597_110 Hb_032223_020 Hb_032223_020 Hb_006573_250--Hb_032223_020 Hb_032631_080 Hb_032631_080 Hb_006573_250--Hb_032631_080 Hb_079394_010--Hb_005333_210 Hb_079394_010--Hb_008376_020 Hb_004519_010 Hb_004519_010 Hb_079394_010--Hb_004519_010 Hb_000832_250 Hb_000832_250 Hb_079394_010--Hb_000832_250 Hb_004709_030 Hb_004709_030 Hb_079394_010--Hb_004709_030 Hb_000075_030 Hb_000075_030 Hb_001005_210--Hb_000075_030 Hb_001005_210--Hb_032631_080 Hb_000484_040 Hb_000484_040 Hb_001005_210--Hb_000484_040 Hb_001691_060 Hb_001691_060 Hb_001005_210--Hb_001691_060 Hb_001300_140--Hb_011440_010 Hb_009150_060 Hb_009150_060 Hb_001300_140--Hb_009150_060 Hb_000836_260 Hb_000836_260 Hb_001300_140--Hb_000836_260 Hb_000753_180 Hb_000753_180 Hb_001300_140--Hb_000753_180 Hb_001300_140--Hb_005333_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 18.5289 167.397 96.1965 0.0273649 0.0443536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133197 0.0261965 0.147329 507.62 155.38

CAGE analysis