Hb_001005_020

Information

Type -
Description -
Location Contig1005: 6105-8075
Sequence    

Annotation

kegg
ID rcu:RCOM_1445090
description hypothetical protein
nr
ID XP_012067352.1
description PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0B3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26875 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00309: 6229-8009 , PASA_asmbl_00310: 6340-8007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_020 0.0 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
2 Hb_000207_200 0.0725934945 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
3 Hb_000579_190 0.0729908645 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
4 Hb_002909_040 0.0753407501 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
5 Hb_000352_350 0.0772576509 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
6 Hb_009449_060 0.0793717257 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
7 Hb_007290_030 0.0796787313 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
8 Hb_000139_190 0.0800580311 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
9 Hb_000169_080 0.0871857194 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
10 Hb_011671_310 0.0876427582 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
11 Hb_004943_030 0.0879936634 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
12 Hb_010998_040 0.0886223392 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
13 Hb_001776_060 0.0895614897 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
14 Hb_000098_140 0.0904310224 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
15 Hb_000089_210 0.0914725245 - - unknown [Medicago truncatula]
16 Hb_002067_030 0.0924420037 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
17 Hb_013394_030 0.0928950535 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
18 Hb_000959_230 0.0929005843 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
19 Hb_004648_090 0.0943358357 - - peroxisomal biogenesis factor, putative [Ricinus communis]
20 Hb_002326_110 0.0951892465 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]

Gene co-expression network

sample Hb_001005_020 Hb_001005_020 Hb_000207_200 Hb_000207_200 Hb_001005_020--Hb_000207_200 Hb_000579_190 Hb_000579_190 Hb_001005_020--Hb_000579_190 Hb_002909_040 Hb_002909_040 Hb_001005_020--Hb_002909_040 Hb_000352_350 Hb_000352_350 Hb_001005_020--Hb_000352_350 Hb_009449_060 Hb_009449_060 Hb_001005_020--Hb_009449_060 Hb_007290_030 Hb_007290_030 Hb_001005_020--Hb_007290_030 Hb_003470_040 Hb_003470_040 Hb_000207_200--Hb_003470_040 Hb_000207_200--Hb_002909_040 Hb_000089_210 Hb_000089_210 Hb_000207_200--Hb_000089_210 Hb_033642_120 Hb_033642_120 Hb_000207_200--Hb_033642_120 Hb_029695_080 Hb_029695_080 Hb_000207_200--Hb_029695_080 Hb_002110_160 Hb_002110_160 Hb_000207_200--Hb_002110_160 Hb_000375_290 Hb_000375_290 Hb_000579_190--Hb_000375_290 Hb_001558_060 Hb_001558_060 Hb_000579_190--Hb_001558_060 Hb_004236_030 Hb_004236_030 Hb_000579_190--Hb_004236_030 Hb_004943_030 Hb_004943_030 Hb_000579_190--Hb_004943_030 Hb_008695_090 Hb_008695_090 Hb_000579_190--Hb_008695_090 Hb_004096_160 Hb_004096_160 Hb_002909_040--Hb_004096_160 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_002909_040--Hb_000089_210 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_000352_350--Hb_007290_030 Hb_000239_060 Hb_000239_060 Hb_000352_350--Hb_000239_060 Hb_000227_270 Hb_000227_270 Hb_000352_350--Hb_000227_270 Hb_000144_070 Hb_000144_070 Hb_000352_350--Hb_000144_070 Hb_000352_350--Hb_000089_210 Hb_009449_060--Hb_004096_160 Hb_172257_010 Hb_172257_010 Hb_009449_060--Hb_172257_010 Hb_000958_080 Hb_000958_080 Hb_009449_060--Hb_000958_080 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060 Hb_001761_120 Hb_001761_120 Hb_007290_030--Hb_001761_120 Hb_001776_060 Hb_001776_060 Hb_007290_030--Hb_001776_060 Hb_007290_030--Hb_000227_270 Hb_007290_030--Hb_000239_060 Hb_001635_040 Hb_001635_040 Hb_007290_030--Hb_001635_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4263 19.8667 34.506 12.7558 13.8035 12.2765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.63771 11.5804 10.3998 10.8426 9.78921

CAGE analysis