Hb_001005_030

Information

Type transcription factor
Description TF Family: SET
Location Contig1005: 9131-17274
Sequence    

Annotation

kegg
ID vvi:100265173
description histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4
nr
ID XP_012067355.1
description PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
swissprot
ID Q8GZB6
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2
trembl
ID A0A067L3Q8
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_26876 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00311: 9054-43465 , PASA_asmbl_00315: 9060-43954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_030 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
2 Hb_000362_170 0.0555085442 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
3 Hb_000373_080 0.0558735336 - - PREDICTED: serine decarboxylase [Jatropha curcas]
4 Hb_001269_230 0.0568259581 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
5 Hb_001635_040 0.0577531038 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
6 Hb_004912_030 0.0626303158 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
7 Hb_003186_020 0.0637412685 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
8 Hb_000737_030 0.063971874 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
9 Hb_000317_510 0.0648843223 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
10 Hb_001377_310 0.0653397255 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
11 Hb_003861_050 0.067180162 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
12 Hb_000101_380 0.0678713522 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
13 Hb_000007_280 0.0680145759 - - hypothetical protein VITISV_000066 [Vitis vinifera]
14 Hb_002272_130 0.0692350431 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
15 Hb_000214_050 0.0692514328 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
16 Hb_001089_070 0.0696653025 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
17 Hb_008568_020 0.0698369887 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
18 Hb_027472_120 0.0699180515 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_012215_010 0.0701415878 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
20 Hb_138435_010 0.0701540925 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001005_030 Hb_001005_030 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_005895_010 Hb_005895_010 Hb_000362_170--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_000362_170--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000362_170--Hb_000373_080 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_001377_310 Hb_001377_310 Hb_000373_080--Hb_001377_310 Hb_000373_080--Hb_000214_050 Hb_001188_060 Hb_001188_060 Hb_001269_230--Hb_001188_060 Hb_004007_220 Hb_004007_220 Hb_001269_230--Hb_004007_220 Hb_109980_010 Hb_109980_010 Hb_001269_230--Hb_109980_010 Hb_001269_230--Hb_000373_080 Hb_001584_140 Hb_001584_140 Hb_001269_230--Hb_001584_140 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_000777_050 Hb_000777_050 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_000130_420 Hb_000130_420 Hb_004912_030--Hb_000130_420 Hb_002092_080 Hb_002092_080 Hb_004912_030--Hb_002092_080 Hb_000243_210 Hb_000243_210 Hb_004912_030--Hb_000243_210 Hb_004912_030--Hb_000362_170 Hb_053079_020 Hb_053079_020 Hb_004912_030--Hb_053079_020 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81984 7.94119 12.6345 9.4454 11.7763 10.8807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03881 5.44111 6.25307 7.76189 8.7434

CAGE analysis