Hb_001005_050

Information

Type -
Description -
Location Contig1005: 42235-43761
Sequence    

Annotation

kegg
ID csv:101227055
description uncharacterized LOC101227055
nr
ID KGN58255.1
description hypothetical protein Csa_3G599480 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0L8H9
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G599480 PE=4 SV=1
Gene Ontology
ID GO:0043229
description histone-lysine n- h3 lysine-9 specific suvh4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00311: 9054-43465 , PASA_asmbl_00315: 9060-43954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_050 0.0 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
2 Hb_004680_120 0.0910427736 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
3 Hb_002667_050 0.098849013 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
4 Hb_003544_140 0.1035863473 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
5 Hb_007922_020 0.10825476 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
6 Hb_011228_010 0.1124170668 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000261_060 0.1126572653 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
8 Hb_007317_140 0.1145810077 - - expressed protein, putative [Ricinus communis]
9 Hb_002055_040 0.1150355003 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
10 Hb_002099_080 0.1181911199 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
11 Hb_000062_450 0.119685497 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
12 Hb_172632_040 0.1209454499 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
13 Hb_020665_010 0.1229917174 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
14 Hb_000159_100 0.12569574 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
15 Hb_165928_040 0.1265329939 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
16 Hb_007820_010 0.1266802053 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
17 Hb_001498_010 0.1267897676 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
18 Hb_002095_010 0.1269693211 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
19 Hb_010710_070 0.1270178638 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
20 Hb_004020_020 0.1309393918 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]

Gene co-expression network

sample Hb_001005_050 Hb_001005_050 Hb_004680_120 Hb_004680_120 Hb_001005_050--Hb_004680_120 Hb_002667_050 Hb_002667_050 Hb_001005_050--Hb_002667_050 Hb_003544_140 Hb_003544_140 Hb_001005_050--Hb_003544_140 Hb_007922_020 Hb_007922_020 Hb_001005_050--Hb_007922_020 Hb_011228_010 Hb_011228_010 Hb_001005_050--Hb_011228_010 Hb_000261_060 Hb_000261_060 Hb_001005_050--Hb_000261_060 Hb_001498_010 Hb_001498_010 Hb_004680_120--Hb_001498_010 Hb_004680_120--Hb_011228_010 Hb_001279_030 Hb_001279_030 Hb_004680_120--Hb_001279_030 Hb_003912_030 Hb_003912_030 Hb_004680_120--Hb_003912_030 Hb_004680_120--Hb_003544_140 Hb_002099_080 Hb_002099_080 Hb_002667_050--Hb_002099_080 Hb_005901_020 Hb_005901_020 Hb_002667_050--Hb_005901_020 Hb_003294_090 Hb_003294_090 Hb_002667_050--Hb_003294_090 Hb_004020_020 Hb_004020_020 Hb_002667_050--Hb_004020_020 Hb_001449_040 Hb_001449_040 Hb_002667_050--Hb_001449_040 Hb_000388_090 Hb_000388_090 Hb_002667_050--Hb_000388_090 Hb_012760_100 Hb_012760_100 Hb_003544_140--Hb_012760_100 Hb_003544_140--Hb_011228_010 Hb_007994_010 Hb_007994_010 Hb_003544_140--Hb_007994_010 Hb_004182_050 Hb_004182_050 Hb_003544_140--Hb_004182_050 Hb_002849_100 Hb_002849_100 Hb_003544_140--Hb_002849_100 Hb_000035_170 Hb_000035_170 Hb_003544_140--Hb_000035_170 Hb_007922_020--Hb_000261_060 Hb_036790_080 Hb_036790_080 Hb_007922_020--Hb_036790_080 Hb_001435_030 Hb_001435_030 Hb_007922_020--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_007922_020--Hb_003994_110 Hb_007317_140 Hb_007317_140 Hb_007922_020--Hb_007317_140 Hb_032920_050 Hb_032920_050 Hb_007922_020--Hb_032920_050 Hb_011228_010--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040 Hb_000261_060--Hb_036790_080 Hb_001369_750 Hb_001369_750 Hb_000261_060--Hb_001369_750 Hb_005253_030 Hb_005253_030 Hb_000261_060--Hb_005253_030 Hb_001008_120 Hb_001008_120 Hb_000261_060--Hb_001008_120 Hb_000261_060--Hb_007317_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.83045 5.64364 5.79775 11.0815 14.6103 17.3833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.68029 4.25501 15.6431 12.8978 25.7657

CAGE analysis