Hb_001005_090

Information

Type -
Description -
Location Contig1005: 91065-92606
Sequence    

Annotation

kegg
ID rcu:RCOM_1445030
description hypothetical protein
nr
ID XP_012067360.1
description PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26881 PE=4 SV=1
Gene Ontology
ID GO:0009507
description cofactor assembly of complex c isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00331: 90829-92630
cDNA
(Sanger)
(ID:Location)		 048_H21.ab1: 91184-92630

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_090 0.0 - - PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]
2 Hb_000365_090 0.1971192653 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_029921_010 0.2062748754 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
4 Hb_002900_140 0.2080309015 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
5 Hb_000982_110 0.2142662262 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
6 Hb_000808_080 0.2186497282 - - PREDICTED: dnaJ homolog subfamily B member 3 [Jatropha curcas]
7 Hb_006132_070 0.22526646 - - phosphate transporter [Manihot esculenta]
8 Hb_005829_010 0.229201481 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
9 Hb_007722_010 0.230306419 - - PREDICTED: kinesin light chain [Jatropha curcas]
10 Hb_001141_410 0.2312269882 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
11 Hb_000997_270 0.2344712906 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
12 Hb_002769_020 0.2374733846 - - DNA-damage-inducible protein f, putative [Ricinus communis]
13 Hb_134364_010 0.2384171133 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
14 Hb_003376_100 0.2390368293 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
15 Hb_182516_010 0.239674393 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
16 Hb_005739_010 0.2442365982 - - hypothetical protein JCGZ_04016 [Jatropha curcas]
17 Hb_095595_010 0.2444626636 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
18 Hb_010642_030 0.2458433953 - - zinc phosphodiesterase, putative [Ricinus communis]
19 Hb_005867_060 0.2466193906 - - PREDICTED: NADPH--cytochrome P450 reductase [Jatropha curcas]
20 Hb_009767_090 0.2472321639 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001005_090 Hb_001005_090 Hb_000365_090 Hb_000365_090 Hb_001005_090--Hb_000365_090 Hb_029921_010 Hb_029921_010 Hb_001005_090--Hb_029921_010 Hb_002900_140 Hb_002900_140 Hb_001005_090--Hb_002900_140 Hb_000982_110 Hb_000982_110 Hb_001005_090--Hb_000982_110 Hb_000808_080 Hb_000808_080 Hb_001005_090--Hb_000808_080 Hb_006132_070 Hb_006132_070 Hb_001005_090--Hb_006132_070 Hb_182516_010 Hb_182516_010 Hb_000365_090--Hb_182516_010 Hb_026447_030 Hb_026447_030 Hb_000365_090--Hb_026447_030 Hb_004375_130 Hb_004375_130 Hb_000365_090--Hb_004375_130 Hb_007722_010 Hb_007722_010 Hb_000365_090--Hb_007722_010 Hb_002027_220 Hb_002027_220 Hb_000365_090--Hb_002027_220 Hb_001268_210 Hb_001268_210 Hb_000365_090--Hb_001268_210 Hb_029921_010--Hb_002900_140 Hb_068804_150 Hb_068804_150 Hb_029921_010--Hb_068804_150 Hb_029921_010--Hb_000982_110 Hb_000997_270 Hb_000997_270 Hb_029921_010--Hb_000997_270 Hb_005892_060 Hb_005892_060 Hb_029921_010--Hb_005892_060 Hb_005739_010 Hb_005739_010 Hb_002900_140--Hb_005739_010 Hb_000065_070 Hb_000065_070 Hb_002900_140--Hb_000065_070 Hb_002900_140--Hb_005892_060 Hb_002900_140--Hb_000997_270 Hb_000630_040 Hb_000630_040 Hb_002900_140--Hb_000630_040 Hb_002067_020 Hb_002067_020 Hb_000982_110--Hb_002067_020 Hb_010642_030 Hb_010642_030 Hb_000982_110--Hb_010642_030 Hb_153533_010 Hb_153533_010 Hb_000982_110--Hb_153533_010 Hb_008489_020 Hb_008489_020 Hb_000982_110--Hb_008489_020 Hb_003405_050 Hb_003405_050 Hb_000982_110--Hb_003405_050 Hb_005488_060 Hb_005488_060 Hb_000982_110--Hb_005488_060 Hb_000808_080--Hb_005488_060 Hb_000808_080--Hb_008489_020 Hb_001898_090 Hb_001898_090 Hb_000808_080--Hb_001898_090 Hb_009767_090 Hb_009767_090 Hb_000808_080--Hb_009767_090 Hb_001085_250 Hb_001085_250 Hb_000808_080--Hb_001085_250 Hb_000640_320 Hb_000640_320 Hb_000808_080--Hb_000640_320 Hb_005433_010 Hb_005433_010 Hb_006132_070--Hb_005433_010 Hb_001085_050 Hb_001085_050 Hb_006132_070--Hb_001085_050 Hb_001401_080 Hb_001401_080 Hb_006132_070--Hb_001401_080 Hb_029695_110 Hb_029695_110 Hb_006132_070--Hb_029695_110 Hb_000243_200 Hb_000243_200 Hb_006132_070--Hb_000243_200 Hb_000072_070 Hb_000072_070 Hb_006132_070--Hb_000072_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.432 5.87674 14.6422 13.2818 29.6108 40.2051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.7923 8.40736 1.29394 3.00799 41.0363

CAGE analysis