Hb_001005_140

Information

Type -
Description -
Location Contig1005: 125883-150906
Sequence    

Annotation

kegg
ID rcu:RCOM_1445010
description hypothetical protein
nr
ID XP_002512825.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGW6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1445010 PE=4 SV=1
Gene Ontology
ID GO:0005783
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00338: 126141-130648 , PASA_asmbl_00339: 145144-148359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000116_320 0.0755736486 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_023344_090 0.0958549186 - - Photosystem II reaction center W protein, putative [Ricinus communis]
4 Hb_003120_020 0.1022280768 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
5 Hb_009476_030 0.1062402591 - - fatty acid desaturase [Manihot esculenta]
6 Hb_017434_040 0.1062686426 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
7 Hb_000808_130 0.1073007454 - - 3-5 exonuclease, putative [Ricinus communis]
8 Hb_000152_350 0.1076629332 - - PREDICTED: enolase [Jatropha curcas]
9 Hb_005345_020 0.1081491225 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_001343_030 0.1090452093 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
11 Hb_001571_100 0.1099596534 - - chlorophyll A-B binding family protein [Populus trichocarpa]
12 Hb_029920_010 0.1102403753 - - pepsin A, putative [Ricinus communis]
13 Hb_002078_330 0.1123673434 - - lipid binding protein, putative [Ricinus communis]
14 Hb_000333_010 0.1125570937 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
15 Hb_001675_090 0.1143159072 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
16 Hb_000300_110 0.1157126033 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
17 Hb_008195_070 0.1161222275 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_002042_090 0.1171805948 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
19 Hb_034235_010 0.1177577707 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_002375_030 0.118628554 - - F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001005_140 Hb_001005_140 Hb_000116_320 Hb_000116_320 Hb_001005_140--Hb_000116_320 Hb_023344_090 Hb_023344_090 Hb_001005_140--Hb_023344_090 Hb_003120_020 Hb_003120_020 Hb_001005_140--Hb_003120_020 Hb_009476_030 Hb_009476_030 Hb_001005_140--Hb_009476_030 Hb_017434_040 Hb_017434_040 Hb_001005_140--Hb_017434_040 Hb_000808_130 Hb_000808_130 Hb_001005_140--Hb_000808_130 Hb_000116_320--Hb_023344_090 Hb_000116_320--Hb_003120_020 Hb_000116_320--Hb_000808_130 Hb_000915_210 Hb_000915_210 Hb_000116_320--Hb_000915_210 Hb_001675_090 Hb_001675_090 Hb_000116_320--Hb_001675_090 Hb_001488_250 Hb_001488_250 Hb_023344_090--Hb_001488_250 Hb_000128_040 Hb_000128_040 Hb_023344_090--Hb_000128_040 Hb_005000_110 Hb_005000_110 Hb_023344_090--Hb_005000_110 Hb_023344_090--Hb_000808_130 Hb_001343_030 Hb_001343_030 Hb_023344_090--Hb_001343_030 Hb_000049_100 Hb_000049_100 Hb_003120_020--Hb_000049_100 Hb_003120_020--Hb_000808_130 Hb_000881_070 Hb_000881_070 Hb_003120_020--Hb_000881_070 Hb_010326_020 Hb_010326_020 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_002375_030 Hb_002375_030 Hb_003120_020--Hb_002375_030 Hb_005345_020 Hb_005345_020 Hb_009476_030--Hb_005345_020 Hb_002042_090 Hb_002042_090 Hb_009476_030--Hb_002042_090 Hb_001975_120 Hb_001975_120 Hb_009476_030--Hb_001975_120 Hb_009476_030--Hb_001675_090 Hb_041433_010 Hb_041433_010 Hb_009476_030--Hb_041433_010 Hb_001789_220 Hb_001789_220 Hb_009476_030--Hb_001789_220 Hb_000608_270 Hb_000608_270 Hb_017434_040--Hb_000608_270 Hb_143629_180 Hb_143629_180 Hb_017434_040--Hb_143629_180 Hb_001571_100 Hb_001571_100 Hb_017434_040--Hb_001571_100 Hb_002028_020 Hb_002028_020 Hb_017434_040--Hb_002028_020 Hb_017434_040--Hb_000808_130 Hb_017434_040--Hb_041433_010 Hb_000808_130--Hb_005000_110 Hb_000808_130--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_000808_130--Hb_007597_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.032931 0.259566 11.1068 4.91205 0.0109941 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0249638 0 0.408658 0.359784 11.0105

CAGE analysis