Hb_001005_160

Information

Type -
Description -
Location Contig1005: 167144-186336
Sequence    

Annotation

kegg
ID rcu:RCOM_1444990
description hypothetical protein
nr
ID XP_002512823.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGW4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1444990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00342: 152521-176632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007894_210 0.143524845 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
3 Hb_010488_040 0.1553195764 - - PREDICTED: phosphomannomutase [Populus euphratica]
4 Hb_000438_090 0.1671043046 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
5 Hb_000926_230 0.1823672393 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001545_050 0.1849012536 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
7 Hb_002411_080 0.1860922156 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003758_020 0.1931888073 - - UGTPg34 [Panax ginseng]
9 Hb_171718_020 0.196152764 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
10 Hb_010789_020 0.1999485279 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
11 Hb_001454_070 0.2000992121 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
12 Hb_000363_350 0.2041370994 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
13 Hb_000580_100 0.2043623744 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
14 Hb_000046_080 0.2064892532 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
15 Hb_089140_120 0.2073738133 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
16 Hb_011671_480 0.2077010376 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000568_060 0.2092253726 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
18 Hb_000743_030 0.2097064218 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
19 Hb_001427_020 0.2111787032 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
20 Hb_002284_210 0.2146877393 - - PREDICTED: protein canopy-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001005_160 Hb_001005_160 Hb_007894_210 Hb_007894_210 Hb_001005_160--Hb_007894_210 Hb_010488_040 Hb_010488_040 Hb_001005_160--Hb_010488_040 Hb_000438_090 Hb_000438_090 Hb_001005_160--Hb_000438_090 Hb_000926_230 Hb_000926_230 Hb_001005_160--Hb_000926_230 Hb_001545_050 Hb_001545_050 Hb_001005_160--Hb_001545_050 Hb_002411_080 Hb_002411_080 Hb_001005_160--Hb_002411_080 Hb_005389_100 Hb_005389_100 Hb_007894_210--Hb_005389_100 Hb_001699_210 Hb_001699_210 Hb_007894_210--Hb_001699_210 Hb_001322_020 Hb_001322_020 Hb_007894_210--Hb_001322_020 Hb_015292_040 Hb_015292_040 Hb_007894_210--Hb_015292_040 Hb_163591_010 Hb_163591_010 Hb_007894_210--Hb_163591_010 Hb_000742_190 Hb_000742_190 Hb_010488_040--Hb_000742_190 Hb_000282_050 Hb_000282_050 Hb_010488_040--Hb_000282_050 Hb_000668_060 Hb_000668_060 Hb_010488_040--Hb_000668_060 Hb_004567_010 Hb_004567_010 Hb_010488_040--Hb_004567_010 Hb_004117_190 Hb_004117_190 Hb_010488_040--Hb_004117_190 Hb_164945_010 Hb_164945_010 Hb_000438_090--Hb_164945_010 Hb_010789_020 Hb_010789_020 Hb_000438_090--Hb_010789_020 Hb_089140_120 Hb_089140_120 Hb_000438_090--Hb_089140_120 Hb_007163_060 Hb_007163_060 Hb_000438_090--Hb_007163_060 Hb_000320_050 Hb_000320_050 Hb_000438_090--Hb_000320_050 Hb_000122_010 Hb_000122_010 Hb_000438_090--Hb_000122_010 Hb_000139_490 Hb_000139_490 Hb_000926_230--Hb_000139_490 Hb_009620_090 Hb_009620_090 Hb_000926_230--Hb_009620_090 Hb_000926_230--Hb_089140_120 Hb_000926_230--Hb_001545_050 Hb_074836_010 Hb_074836_010 Hb_000926_230--Hb_074836_010 Hb_000028_060 Hb_000028_060 Hb_001545_050--Hb_000028_060 Hb_007123_060 Hb_007123_060 Hb_001545_050--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_001545_050--Hb_003925_070 Hb_153258_050 Hb_153258_050 Hb_001545_050--Hb_153258_050 Hb_001902_130 Hb_001902_130 Hb_001545_050--Hb_001902_130 Hb_004883_050 Hb_004883_050 Hb_001545_050--Hb_004883_050 Hb_000120_540 Hb_000120_540 Hb_002411_080--Hb_000120_540 Hb_000029_090 Hb_000029_090 Hb_002411_080--Hb_000029_090 Hb_002232_320 Hb_002232_320 Hb_002411_080--Hb_002232_320 Hb_001123_030 Hb_001123_030 Hb_002411_080--Hb_001123_030 Hb_022181_030 Hb_022181_030 Hb_002411_080--Hb_022181_030 Hb_001025_110 Hb_001025_110 Hb_002411_080--Hb_001025_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117315 0.224486 0.707258 0.516581 0.240933 0.312137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.257534 0.318447 0 0.103493 0.0614831

CAGE analysis