Hb_001006_010

Information

Type -
Description -
Location Contig1006: 15212-16612
Sequence    

Annotation

kegg
ID rcu:RCOM_0774550
description hypothetical protein
nr
ID XP_012072439.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID Q6AZB8
description Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
trembl
ID A0A067L2D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04867 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclease harbi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00380: 15109-16371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_010 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_007472_080 0.0676842536 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
3 Hb_000866_110 0.0882424942 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
4 Hb_005181_050 0.0923522818 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
5 Hb_000271_120 0.0965438452 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
6 Hb_011925_020 0.0972717492 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000049_250 0.1014901094 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
8 Hb_001477_020 0.1029355673 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
9 Hb_001366_270 0.1050410603 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
10 Hb_007546_030 0.1062077594 - - transcription cofactor, putative [Ricinus communis]
11 Hb_000125_180 0.1081173282 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
12 Hb_002235_310 0.1102327255 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
13 Hb_053575_020 0.1103329182 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
14 Hb_000445_130 0.1103665754 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
15 Hb_000321_090 0.111386809 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
16 Hb_000220_120 0.1116553945 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
17 Hb_004586_090 0.1118429406 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
18 Hb_003125_180 0.1142060409 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
19 Hb_000200_110 0.1142136292 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
20 Hb_033799_010 0.1147614916 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_010 Hb_001006_010 Hb_007472_080 Hb_007472_080 Hb_001006_010--Hb_007472_080 Hb_000866_110 Hb_000866_110 Hb_001006_010--Hb_000866_110 Hb_005181_050 Hb_005181_050 Hb_001006_010--Hb_005181_050 Hb_000271_120 Hb_000271_120 Hb_001006_010--Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_001006_010--Hb_011925_020 Hb_000049_250 Hb_000049_250 Hb_001006_010--Hb_000049_250 Hb_007546_030 Hb_007546_030 Hb_007472_080--Hb_007546_030 Hb_007472_080--Hb_000866_110 Hb_007472_080--Hb_005181_050 Hb_001477_020 Hb_001477_020 Hb_007472_080--Hb_001477_020 Hb_000661_260 Hb_000661_260 Hb_007472_080--Hb_000661_260 Hb_002235_310 Hb_002235_310 Hb_000866_110--Hb_002235_310 Hb_000205_250 Hb_000205_250 Hb_000866_110--Hb_000205_250 Hb_000125_180 Hb_000125_180 Hb_000866_110--Hb_000125_180 Hb_000866_110--Hb_011925_020 Hb_000866_110--Hb_000271_120 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_005181_050--Hb_000125_180 Hb_000844_050 Hb_000844_050 Hb_005181_050--Hb_000844_050 Hb_000809_250 Hb_000809_250 Hb_005181_050--Hb_000809_250 Hb_000271_120--Hb_011925_020 Hb_000271_120--Hb_000205_250 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120 Hb_011925_020--Hb_000049_250 Hb_005074_020 Hb_005074_020 Hb_011925_020--Hb_005074_020 Hb_000080_110 Hb_000080_110 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_011925_020--Hb_005181_050 Hb_000049_250--Hb_000321_090 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_000049_250--Hb_005074_020 Hb_000049_250--Hb_000220_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82696 11.7527 4.96816 7.29008 1.81074 4.68072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56857 1.86116 2.6403 13.8421 12.7553

CAGE analysis