Hb_001006_020

Information

Type -
Description -
Location Contig1006: 17234-23611
Sequence    

Annotation

kegg
ID rcu:RCOM_0774560
description nucleic acid binding protein, putative
nr
ID XP_012072438.1
description PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
swissprot
ID Q5F457
description WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1
trembl
ID A0A067KTG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04866 PE=4 SV=1
Gene Ontology
ID GO:0015030
description ww domain-binding protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00381: 17271-23510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_020 0.0 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
2 Hb_000289_110 0.0592581032 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
3 Hb_005144_050 0.0783564416 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
4 Hb_000159_130 0.0792698244 - - RNA binding protein, putative [Ricinus communis]
5 Hb_001366_180 0.0814817598 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
6 Hb_002183_060 0.0848768498 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
7 Hb_000421_220 0.0865417755 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
8 Hb_001728_060 0.0872505794 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
9 Hb_000346_040 0.088730342 - - -
10 Hb_025098_010 0.0895447783 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_002111_040 0.0919727658 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
12 Hb_024128_020 0.0954443159 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
13 Hb_002284_230 0.0959169676 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
14 Hb_011360_070 0.0973493767 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
15 Hb_002289_080 0.0979486478 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
16 Hb_001390_130 0.0986816685 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
17 Hb_025194_100 0.0996904523 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
18 Hb_001307_030 0.0997374348 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
19 Hb_001234_100 0.101236307 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
20 Hb_000483_300 0.1016007196 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_001006_020 Hb_001006_020 Hb_000289_110 Hb_000289_110 Hb_001006_020--Hb_000289_110 Hb_005144_050 Hb_005144_050 Hb_001006_020--Hb_005144_050 Hb_000159_130 Hb_000159_130 Hb_001006_020--Hb_000159_130 Hb_001366_180 Hb_001366_180 Hb_001006_020--Hb_001366_180 Hb_002183_060 Hb_002183_060 Hb_001006_020--Hb_002183_060 Hb_000421_220 Hb_000421_220 Hb_001006_020--Hb_000421_220 Hb_000289_110--Hb_001366_180 Hb_002811_130 Hb_002811_130 Hb_000289_110--Hb_002811_130 Hb_000289_110--Hb_005144_050 Hb_002014_030 Hb_002014_030 Hb_000289_110--Hb_002014_030 Hb_000337_050 Hb_000337_050 Hb_000289_110--Hb_000337_050 Hb_005144_050--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_001728_060 Hb_001728_060 Hb_000159_130--Hb_001728_060 Hb_000159_130--Hb_000289_110 Hb_027459_020 Hb_027459_020 Hb_000159_130--Hb_027459_020 Hb_000107_150 Hb_000107_150 Hb_000159_130--Hb_000107_150 Hb_003020_260 Hb_003020_260 Hb_000159_130--Hb_003020_260 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_001366_180--Hb_002014_030 Hb_002183_060--Hb_000421_220 Hb_001386_040 Hb_001386_040 Hb_002183_060--Hb_001386_040 Hb_008453_030 Hb_008453_030 Hb_002183_060--Hb_008453_030 Hb_015934_070 Hb_015934_070 Hb_002183_060--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_002183_060--Hb_031862_100 Hb_003697_040 Hb_003697_040 Hb_002183_060--Hb_003697_040 Hb_000421_220--Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_000421_220--Hb_004934_100 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_000421_220--Hb_015934_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5725 3.1162 5.98574 12.8086 7.18565 12.1413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8565 17.3726 14.4056 11.2836 16.5912

CAGE analysis