Hb_001006_050

Information

Type -
Description -
Location Contig1006: 62967-88751
Sequence    

Annotation

kegg
ID bdi:100830117
description uncharacterized LOC100830117
nr
ID XP_004958683.2
description PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
swissprot
ID Q9M9Q9
description Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=3 SV=2
trembl
ID A0A0E0NC86
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0005576
description lignin-forming anionic peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00388: 63526-64618 , PASA_asmbl_00389: 67706-67965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_050 0.0 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
2 Hb_103452_010 0.0181079962 - - hypothetical protein VITISV_027174 [Vitis vinifera]
3 Hb_135673_010 0.0194031408 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
4 Hb_005356_030 0.0311607489 - - protein binding protein, putative [Ricinus communis]
5 Hb_151094_020 0.0529504945 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
6 Hb_004116_090 0.0579831016 - - -
7 Hb_147060_010 0.1025447622 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
8 Hb_010812_130 0.1040921719 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
9 Hb_000438_030 0.1058787358 - - -
10 Hb_002498_290 0.1124378969 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
11 Hb_046615_040 0.1229529606 - - unnamed protein product [Vitis vinifera]
12 Hb_030736_030 0.1262449874 - - hypothetical protein VITISV_006651 [Vitis vinifera]
13 Hb_003858_050 0.130470439 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
14 Hb_000002_150 0.1319652683 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000679_280 0.1337873546 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
16 Hb_003010_050 0.1407362404 - - -
17 Hb_003020_340 0.1485040849 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
18 Hb_001862_160 0.1485636965 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
19 Hb_160814_010 0.1545258879 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
20 Hb_002759_200 0.1566056982 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_050 Hb_001006_050 Hb_103452_010 Hb_103452_010 Hb_001006_050--Hb_103452_010 Hb_135673_010 Hb_135673_010 Hb_001006_050--Hb_135673_010 Hb_005356_030 Hb_005356_030 Hb_001006_050--Hb_005356_030 Hb_151094_020 Hb_151094_020 Hb_001006_050--Hb_151094_020 Hb_004116_090 Hb_004116_090 Hb_001006_050--Hb_004116_090 Hb_147060_010 Hb_147060_010 Hb_001006_050--Hb_147060_010 Hb_103452_010--Hb_005356_030 Hb_103452_010--Hb_135673_010 Hb_103452_010--Hb_004116_090 Hb_103452_010--Hb_151094_020 Hb_000002_150 Hb_000002_150 Hb_103452_010--Hb_000002_150 Hb_135673_010--Hb_005356_030 Hb_135673_010--Hb_004116_090 Hb_135673_010--Hb_151094_020 Hb_002498_290 Hb_002498_290 Hb_135673_010--Hb_002498_290 Hb_005356_030--Hb_004116_090 Hb_005356_030--Hb_151094_020 Hb_005356_030--Hb_000002_150 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030 Hb_003858_050 Hb_003858_050 Hb_004116_090--Hb_003858_050 Hb_004116_090--Hb_151094_020 Hb_147060_010--Hb_010812_130 Hb_147060_010--Hb_000438_030 Hb_046615_040 Hb_046615_040 Hb_147060_010--Hb_046615_040 Hb_003010_050 Hb_003010_050 Hb_147060_010--Hb_003010_050 Hb_005306_060 Hb_005306_060 Hb_147060_010--Hb_005306_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.177933 0.158721 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.153614 0

CAGE analysis