Hb_001006_100

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig1006: 114033-116982
Sequence    

Annotation

kegg
ID rcu:RCOM_0774970
description brg-1 associated factor, putative
nr
ID XP_012072430.1
description PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9FMT4
description SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1
trembl
ID A0A067KTG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04861 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00390: 114090-117239 , PASA_asmbl_00391: 116642-117174 , PASA_asmbl_00392: 116567-117195 , PASA_asmbl_00394: 117926-119291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_100 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
2 Hb_000780_170 0.0882298471 - - PREDICTED: OBERON-like protein [Jatropha curcas]
3 Hb_000260_640 0.0897175921 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
4 Hb_005260_010 0.091381007 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
5 Hb_000398_020 0.0935235664 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
6 Hb_001277_300 0.0947279903 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
7 Hb_000046_070 0.0948366575 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_004648_050 0.095704438 - - ring finger protein, putative [Ricinus communis]
9 Hb_007813_030 0.0957787695 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
10 Hb_008253_030 0.0985140513 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
11 Hb_000170_150 0.0998135839 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
12 Hb_005104_010 0.1001818093 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
13 Hb_004668_060 0.1016420496 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
14 Hb_003435_050 0.1017460695 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Jatropha curcas]
15 Hb_000917_160 0.1019293024 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
16 Hb_001054_030 0.1029156907 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
17 Hb_002542_130 0.1034010928 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
18 Hb_000264_030 0.1035680161 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
19 Hb_010712_040 0.1036778137 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas]
20 Hb_002000_070 0.1037130676 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_100 Hb_001006_100 Hb_000780_170 Hb_000780_170 Hb_001006_100--Hb_000780_170 Hb_000260_640 Hb_000260_640 Hb_001006_100--Hb_000260_640 Hb_005260_010 Hb_005260_010 Hb_001006_100--Hb_005260_010 Hb_000398_020 Hb_000398_020 Hb_001006_100--Hb_000398_020 Hb_001277_300 Hb_001277_300 Hb_001006_100--Hb_001277_300 Hb_000046_070 Hb_000046_070 Hb_001006_100--Hb_000046_070 Hb_008253_030 Hb_008253_030 Hb_000780_170--Hb_008253_030 Hb_000120_660 Hb_000120_660 Hb_000780_170--Hb_000120_660 Hb_001033_050 Hb_001033_050 Hb_000780_170--Hb_001033_050 Hb_001147_110 Hb_001147_110 Hb_000780_170--Hb_001147_110 Hb_000418_140 Hb_000418_140 Hb_000780_170--Hb_000418_140 Hb_000780_170--Hb_000046_070 Hb_001054_030 Hb_001054_030 Hb_000260_640--Hb_001054_030 Hb_006117_080 Hb_006117_080 Hb_000260_640--Hb_006117_080 Hb_002253_080 Hb_002253_080 Hb_000260_640--Hb_002253_080 Hb_000321_150 Hb_000321_150 Hb_000260_640--Hb_000321_150 Hb_000661_200 Hb_000661_200 Hb_000260_640--Hb_000661_200 Hb_003729_030 Hb_003729_030 Hb_000260_640--Hb_003729_030 Hb_000594_040 Hb_000594_040 Hb_005260_010--Hb_000594_040 Hb_000768_180 Hb_000768_180 Hb_005260_010--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_005260_010--Hb_000236_220 Hb_000640_310 Hb_000640_310 Hb_005260_010--Hb_000640_310 Hb_000191_130 Hb_000191_130 Hb_005260_010--Hb_000191_130 Hb_005260_010--Hb_000418_140 Hb_000648_080 Hb_000648_080 Hb_000398_020--Hb_000648_080 Hb_007558_070 Hb_007558_070 Hb_000398_020--Hb_007558_070 Hb_000406_230 Hb_000406_230 Hb_000398_020--Hb_000406_230 Hb_002000_070 Hb_002000_070 Hb_000398_020--Hb_002000_070 Hb_000236_400 Hb_000236_400 Hb_000398_020--Hb_000236_400 Hb_004976_010 Hb_004976_010 Hb_000398_020--Hb_004976_010 Hb_002027_280 Hb_002027_280 Hb_001277_300--Hb_002027_280 Hb_002542_130 Hb_002542_130 Hb_001277_300--Hb_002542_130 Hb_000243_210 Hb_000243_210 Hb_001277_300--Hb_000243_210 Hb_001318_070 Hb_001318_070 Hb_001277_300--Hb_001318_070 Hb_001231_090 Hb_001231_090 Hb_001277_300--Hb_001231_090 Hb_089140_050 Hb_089140_050 Hb_001277_300--Hb_089140_050 Hb_002081_120 Hb_002081_120 Hb_000046_070--Hb_002081_120 Hb_000046_070--Hb_001147_110 Hb_000879_160 Hb_000879_160 Hb_000046_070--Hb_000879_160 Hb_000046_070--Hb_001033_050 Hb_004668_060 Hb_004668_060 Hb_000046_070--Hb_004668_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4683 46.5057 14.7057 20.7472 27.3228 28.0759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5374 11.3227 8.9765 15.551 22.9975

CAGE analysis