Hb_001006_110

Information

Type -
Description -
Location Contig1006: 117829-119799
Sequence    

Annotation

kegg
ID rcu:RCOM_0775080
description transcription factor, putative
nr
ID XP_012072429.1
description PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04860 PE=4 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor gtl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00394: 117926-119291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_110 0.0 - - PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
2 Hb_000031_210 0.1169345287 - - cytochrome P450, putative [Ricinus communis]
3 Hb_001500_130 0.1263347472 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
4 Hb_000083_220 0.1275957976 - - -
5 Hb_002387_010 0.1280467049 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
6 Hb_000076_240 0.1291148781 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
7 Hb_000318_310 0.1295258666 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
8 Hb_000002_110 0.1323349271 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
9 Hb_020956_030 0.1323585887 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
10 Hb_008195_090 0.1329488412 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000803_080 0.1330218111 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_004032_280 0.1330244427 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
13 Hb_001433_090 0.1331096697 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
14 Hb_008536_020 0.133158038 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
15 Hb_002805_280 0.134709886 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
16 Hb_000061_450 0.1348099179 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002477_190 0.1348641855 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
18 Hb_027472_060 0.1354324332 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
19 Hb_001199_110 0.1357064784 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
20 Hb_003162_060 0.1363332044 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]

Gene co-expression network

sample Hb_001006_110 Hb_001006_110 Hb_000031_210 Hb_000031_210 Hb_001006_110--Hb_000031_210 Hb_001500_130 Hb_001500_130 Hb_001006_110--Hb_001500_130 Hb_000083_220 Hb_000083_220 Hb_001006_110--Hb_000083_220 Hb_002387_010 Hb_002387_010 Hb_001006_110--Hb_002387_010 Hb_000076_240 Hb_000076_240 Hb_001006_110--Hb_000076_240 Hb_000318_310 Hb_000318_310 Hb_001006_110--Hb_000318_310 Hb_000031_210--Hb_000083_220 Hb_010978_020 Hb_010978_020 Hb_000031_210--Hb_010978_020 Hb_001296_060 Hb_001296_060 Hb_000031_210--Hb_001296_060 Hb_001999_070 Hb_001999_070 Hb_000031_210--Hb_001999_070 Hb_002986_030 Hb_002986_030 Hb_000031_210--Hb_002986_030 Hb_001433_090 Hb_001433_090 Hb_001500_130--Hb_001433_090 Hb_000002_110 Hb_000002_110 Hb_001500_130--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001500_130--Hb_010589_010 Hb_005010_030 Hb_005010_030 Hb_001500_130--Hb_005010_030 Hb_000083_210 Hb_000083_210 Hb_001500_130--Hb_000083_210 Hb_002477_190 Hb_002477_190 Hb_001500_130--Hb_002477_190 Hb_000083_220--Hb_010978_020 Hb_000083_220--Hb_002986_030 Hb_000083_220--Hb_001296_060 Hb_000061_450 Hb_000061_450 Hb_000083_220--Hb_000061_450 Hb_002805_280 Hb_002805_280 Hb_002387_010--Hb_002805_280 Hb_004607_110 Hb_004607_110 Hb_002387_010--Hb_004607_110 Hb_008195_090 Hb_008195_090 Hb_002387_010--Hb_008195_090 Hb_044478_010 Hb_044478_010 Hb_002387_010--Hb_044478_010 Hb_029991_010 Hb_029991_010 Hb_002387_010--Hb_029991_010 Hb_003913_120 Hb_003913_120 Hb_002387_010--Hb_003913_120 Hb_003549_100 Hb_003549_100 Hb_000076_240--Hb_003549_100 Hb_010883_160 Hb_010883_160 Hb_000076_240--Hb_010883_160 Hb_132880_010 Hb_132880_010 Hb_000076_240--Hb_132880_010 Hb_001397_020 Hb_001397_020 Hb_000076_240--Hb_001397_020 Hb_003152_020 Hb_003152_020 Hb_000076_240--Hb_003152_020 Hb_136408_040 Hb_136408_040 Hb_000076_240--Hb_136408_040 Hb_001981_050 Hb_001981_050 Hb_000318_310--Hb_001981_050 Hb_185811_010 Hb_185811_010 Hb_000318_310--Hb_185811_010 Hb_003855_060 Hb_003855_060 Hb_000318_310--Hb_003855_060 Hb_007904_150 Hb_007904_150 Hb_000318_310--Hb_007904_150 Hb_000917_300 Hb_000917_300 Hb_000318_310--Hb_000917_300 Hb_004459_010 Hb_004459_010 Hb_000318_310--Hb_004459_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0445393 0.374753 0.650452 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0555161 0 0 0.0175905 0.977116

CAGE analysis