Hb_001006_140

Information

Type transcription factor
Description TF Family: SNF2
Location Contig1006: 169959-181119
Sequence    

Annotation

kegg
ID rcu:RCOM_0775510
description ATP binding protein, putative (EC:2.7.11.1)
nr
ID XP_012072424.1
description PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
swissprot
ID Q9ZUL5
description Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana GN=ETL1 PE=2 SV=1
trembl
ID A0A067KTG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04856 PE=4 SV=1
Gene Ontology
ID GO:0003677
description snf2 domain-containing protein helicase domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00395: 169962-181127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_140 0.0 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
2 Hb_000051_070 0.0584004013 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
3 Hb_000038_170 0.0606806161 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
4 Hb_001199_020 0.062909047 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
5 Hb_000120_790 0.0652258452 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
6 Hb_003952_070 0.0657209461 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_002518_280 0.0662327126 - - phosphate transporter [Manihot esculenta]
8 Hb_000853_170 0.0672390235 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
9 Hb_003058_190 0.0678563082 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
10 Hb_000853_420 0.0680143153 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_000011_200 0.0692939453 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
12 Hb_007218_080 0.0694020268 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
13 Hb_000879_200 0.069455549 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
14 Hb_003406_010 0.0696797311 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
15 Hb_000085_160 0.0701235381 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
16 Hb_005276_210 0.0716368875 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
17 Hb_001258_090 0.07177925 - - PREDICTED: protein spt2-like [Jatropha curcas]
18 Hb_001489_150 0.0727321309 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
19 Hb_011673_030 0.0728258496 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
20 Hb_006922_100 0.0734321223 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_140 Hb_001006_140 Hb_000051_070 Hb_000051_070 Hb_001006_140--Hb_000051_070 Hb_000038_170 Hb_000038_170 Hb_001006_140--Hb_000038_170 Hb_001199_020 Hb_001199_020 Hb_001006_140--Hb_001199_020 Hb_000120_790 Hb_000120_790 Hb_001006_140--Hb_000120_790 Hb_003952_070 Hb_003952_070 Hb_001006_140--Hb_003952_070 Hb_002518_280 Hb_002518_280 Hb_001006_140--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_000051_070--Hb_000152_380 Hb_000815_210 Hb_000815_210 Hb_000051_070--Hb_000815_210 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_001369_420 Hb_001369_420 Hb_000051_070--Hb_001369_420 Hb_000051_070--Hb_003952_070 Hb_000038_170--Hb_002518_280 Hb_011671_430 Hb_011671_430 Hb_000038_170--Hb_011671_430 Hb_001595_030 Hb_001595_030 Hb_000038_170--Hb_001595_030 Hb_003428_030 Hb_003428_030 Hb_000038_170--Hb_003428_030 Hb_000879_200 Hb_000879_200 Hb_000038_170--Hb_000879_200 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_007441_120 Hb_007441_120 Hb_001199_020--Hb_007441_120 Hb_006922_100 Hb_006922_100 Hb_001199_020--Hb_006922_100 Hb_004055_030 Hb_004055_030 Hb_001199_020--Hb_004055_030 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_004881_020 Hb_004881_020 Hb_003952_070--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_003952_070--Hb_006252_040 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_010618_010 Hb_010618_010 Hb_002518_280--Hb_010618_010 Hb_002518_280--Hb_000152_380 Hb_002518_280--Hb_000879_200 Hb_004310_150 Hb_004310_150 Hb_002518_280--Hb_004310_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5538 14.8256 11.1158 11.3051 27.082 28.5463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0614 23.1103 20.5481 15.6301 14.5699

CAGE analysis