Hb_001006_160

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1006: 202974-209043
Sequence    

Annotation

kegg
ID rcu:RCOM_0775740
description nucleic acid binding protein, putative
nr
ID XP_002521878.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9ZUL3
description Protein indeterminate-domain 5, chloroplastic OS=Arabidopsis thaliana GN=IDD5 PE=1 SV=1
trembl
ID B9S7A9
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0775740 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00399: 202995-208516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_160 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_005276_080 0.0363835137 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
3 Hb_006665_020 0.0563676055 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_002785_040 0.056680511 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
5 Hb_003747_090 0.0577533646 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_002592_040 0.0596223991 - - ACC oxidase 3 [Hevea brasiliensis]
7 Hb_000083_180 0.0607094337 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
8 Hb_005375_090 0.0615984342 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
9 Hb_107748_010 0.0635661057 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
10 Hb_000450_050 0.065308711 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
11 Hb_000948_240 0.0664473581 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004525_010 0.0674694952 - - late embryogenesis abundant, putative [Ricinus communis]
13 Hb_013405_110 0.068142435 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_000676_320 0.0696454062 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
15 Hb_001621_090 0.0700142053 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
16 Hb_001856_240 0.0709402055 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
17 Hb_008748_050 0.0729051555 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
18 Hb_003038_060 0.0731313748 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
19 Hb_009193_020 0.073452797 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
20 Hb_000254_020 0.0735763626 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]

Gene co-expression network

sample Hb_001006_160 Hb_001006_160 Hb_005276_080 Hb_005276_080 Hb_001006_160--Hb_005276_080 Hb_006665_020 Hb_006665_020 Hb_001006_160--Hb_006665_020 Hb_002785_040 Hb_002785_040 Hb_001006_160--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_001006_160--Hb_003747_090 Hb_002592_040 Hb_002592_040 Hb_001006_160--Hb_002592_040 Hb_000083_180 Hb_000083_180 Hb_001006_160--Hb_000083_180 Hb_005276_080--Hb_006665_020 Hb_000531_100 Hb_000531_100 Hb_005276_080--Hb_000531_100 Hb_000450_050 Hb_000450_050 Hb_005276_080--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_005276_080--Hb_000589_340 Hb_000676_320 Hb_000676_320 Hb_005276_080--Hb_000676_320 Hb_001621_090 Hb_001621_090 Hb_006665_020--Hb_001621_090 Hb_005605_010 Hb_005605_010 Hb_006665_020--Hb_005605_010 Hb_006665_020--Hb_000450_050 Hb_004837_230 Hb_004837_230 Hb_006665_020--Hb_004837_230 Hb_002785_040--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002785_040--Hb_005375_090 Hb_013405_110 Hb_013405_110 Hb_002785_040--Hb_013405_110 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_004129_170 Hb_004129_170 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_003747_090--Hb_005375_090 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_004129_170 Hb_002890_170 Hb_002890_170 Hb_003747_090--Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_003747_090--Hb_082402_020 Hb_000948_240 Hb_000948_240 Hb_002592_040--Hb_000948_240 Hb_002592_040--Hb_013405_110 Hb_002592_040--Hb_005375_090 Hb_001862_040 Hb_001862_040 Hb_002592_040--Hb_001862_040 Hb_002592_040--Hb_003747_090 Hb_000230_420 Hb_000230_420 Hb_000083_180--Hb_000230_420 Hb_003020_120 Hb_003020_120 Hb_000083_180--Hb_003020_120 Hb_000083_180--Hb_000676_320 Hb_117807_020 Hb_117807_020 Hb_000083_180--Hb_117807_020 Hb_000083_180--Hb_005276_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0203083 0.305307 16.6111 3.92306 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0230804 0.0544806 0 0.151753 29.5725

CAGE analysis