Hb_001006_170

Information

Type -
Description -
Location Contig1006: 215295-218096
Sequence    

Annotation

kegg
ID rcu:RCOM_0775760
description Endonuclease V, putative (EC:3.1.21.7)
nr
ID XP_002521880.1
description Endonuclease V, putative [Ricinus communis]
swissprot
ID Q8C9A2
description Endonuclease V OS=Mus musculus GN=Endov PE=1 SV=2
trembl
ID B9S7B1
description Endonuclease V, putative OS=Ricinus communis GN=RCOM_0775760 PE=3 SV=1
Gene Ontology
ID GO:0043737
description endonuclease v isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00402: 215396-217773 , PASA_asmbl_00403: 215754-217776 , PASA_asmbl_00404: 218804-218998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_170 0.0 - - Endonuclease V, putative [Ricinus communis]
2 Hb_000017_120 0.0614924142 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
3 Hb_168707_030 0.0665817677 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
4 Hb_005503_030 0.067560586 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
5 Hb_033843_010 0.0716867533 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
6 Hb_002149_020 0.0752261806 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
7 Hb_000000_080 0.0794572542 - - lipoate-protein ligase B, putative [Ricinus communis]
8 Hb_000120_950 0.0802351571 - - PREDICTED: protein GRIP [Jatropha curcas]
9 Hb_000620_010 0.0807952615 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
10 Hb_039837_010 0.0811047313 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
11 Hb_003392_040 0.0811447328 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
12 Hb_007951_060 0.081731782 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_002685_140 0.08295976 - - PREDICTED: membrin-11 [Jatropha curcas]
14 Hb_001377_290 0.0834039193 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
15 Hb_000009_170 0.083465815 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
16 Hb_000327_120 0.084035873 - - FGFR1 oncogene partner, putative [Ricinus communis]
17 Hb_148912_010 0.084104493 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002272_250 0.0855243982 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_003058_130 0.0855722166 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
20 Hb_001252_100 0.0857573492 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_170 Hb_001006_170 Hb_000017_120 Hb_000017_120 Hb_001006_170--Hb_000017_120 Hb_168707_030 Hb_168707_030 Hb_001006_170--Hb_168707_030 Hb_005503_030 Hb_005503_030 Hb_001006_170--Hb_005503_030 Hb_033843_010 Hb_033843_010 Hb_001006_170--Hb_033843_010 Hb_002149_020 Hb_002149_020 Hb_001006_170--Hb_002149_020 Hb_000000_080 Hb_000000_080 Hb_001006_170--Hb_000000_080 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_002272_250 Hb_002272_250 Hb_000017_120--Hb_002272_250 Hb_000057_040 Hb_000057_040 Hb_168707_030--Hb_000057_040 Hb_003642_060 Hb_003642_060 Hb_168707_030--Hb_003642_060 Hb_001439_150 Hb_001439_150 Hb_168707_030--Hb_001439_150 Hb_168707_030--Hb_000000_080 Hb_004195_160 Hb_004195_160 Hb_168707_030--Hb_004195_160 Hb_143629_010 Hb_143629_010 Hb_005503_030--Hb_143629_010 Hb_007576_040 Hb_007576_040 Hb_005503_030--Hb_007576_040 Hb_008887_050 Hb_008887_050 Hb_005503_030--Hb_008887_050 Hb_031527_100 Hb_031527_100 Hb_005503_030--Hb_031527_100 Hb_000666_110 Hb_000666_110 Hb_005503_030--Hb_000666_110 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040 Hb_002609_110 Hb_002609_110 Hb_002149_020--Hb_002609_110 Hb_066182_010 Hb_066182_010 Hb_002149_020--Hb_066182_010 Hb_004440_090 Hb_004440_090 Hb_002149_020--Hb_004440_090 Hb_002391_300 Hb_002391_300 Hb_002149_020--Hb_002391_300 Hb_000300_060 Hb_000300_060 Hb_002149_020--Hb_000300_060 Hb_003005_020 Hb_003005_020 Hb_002149_020--Hb_003005_020 Hb_006065_020 Hb_006065_020 Hb_000000_080--Hb_006065_020 Hb_000000_080--Hb_001439_150 Hb_000030_010 Hb_000030_010 Hb_000000_080--Hb_000030_010 Hb_000000_080--Hb_000017_120 Hb_007951_060 Hb_007951_060 Hb_000000_080--Hb_007951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0799 5.24854 8.5499 8.83561 23.7093 22.1313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7136 17.5707 19.709 10.7619 3.76278

CAGE analysis