Hb_001006_180

Information

Type -
Description -
Location Contig1006: 219439-234577
Sequence    

Annotation

kegg
ID rcu:RCOM_0775770
description Endonuclease V, putative (EC:3.1.21.7)
nr
ID XP_012072413.1
description PREDICTED: endonuclease V-like [Jatropha curcas]
swissprot
ID A7NSC5
description Endonuclease V OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=nfi PE=3 SV=1
trembl
ID A0A067KQ37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04850 PE=4 SV=1
Gene Ontology
ID GO:0016787
description endonuclease v isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00405: 219165-234487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_180 0.0 - - PREDICTED: endonuclease V-like [Jatropha curcas]
2 Hb_001762_060 0.0716699462 - - pantothenate kinase, putative [Ricinus communis]
3 Hb_024714_060 0.0775487544 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
4 Hb_012423_050 0.0818953639 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
5 Hb_006831_030 0.0861335735 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
6 Hb_000398_160 0.087270057 - - GDP-mannose transporter, putative [Ricinus communis]
7 Hb_162275_030 0.0914842104 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
8 Hb_000069_100 0.0926004835 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003929_120 0.0933389525 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
10 Hb_000032_040 0.0945851877 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
11 Hb_009265_060 0.1016010759 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
12 Hb_007382_150 0.1035453997 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
13 Hb_012573_030 0.1063037608 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006573_220 0.1092036504 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
15 Hb_007594_120 0.1119128913 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
16 Hb_002097_060 0.11316995 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_001575_020 0.1134826795 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003504_020 0.113745561 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
19 Hb_001687_040 0.1167815782 - - actin-depolymerizing factor [Hevea brasiliensis]
20 Hb_000907_090 0.1189177097 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001006_180 Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_001006_180--Hb_001762_060 Hb_024714_060 Hb_024714_060 Hb_001006_180--Hb_024714_060 Hb_012423_050 Hb_012423_050 Hb_001006_180--Hb_012423_050 Hb_006831_030 Hb_006831_030 Hb_001006_180--Hb_006831_030 Hb_000398_160 Hb_000398_160 Hb_001006_180--Hb_000398_160 Hb_162275_030 Hb_162275_030 Hb_001006_180--Hb_162275_030 Hb_000032_040 Hb_000032_040 Hb_001762_060--Hb_000032_040 Hb_000069_100 Hb_000069_100 Hb_001762_060--Hb_000069_100 Hb_001762_060--Hb_024714_060 Hb_001762_060--Hb_012423_050 Hb_001762_060--Hb_000398_160 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_007594_120 Hb_007594_120 Hb_024714_060--Hb_007594_120 Hb_024714_060--Hb_006831_030 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_012423_050--Hb_000398_160 Hb_012423_050--Hb_009265_060 Hb_012423_050--Hb_000032_040 Hb_006831_030--Hb_000069_100 Hb_006831_030--Hb_000398_160 Hb_011245_020 Hb_011245_020 Hb_006831_030--Hb_011245_020 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_006831_030--Hb_001268_080 Hb_004041_040 Hb_004041_040 Hb_000398_160--Hb_004041_040 Hb_000272_070 Hb_000272_070 Hb_000398_160--Hb_000272_070 Hb_000398_160--Hb_000069_100 Hb_003929_120 Hb_003929_120 Hb_000398_160--Hb_003929_120 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4006 3.47117 3.96727 13.4347 7.60819 19.7839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.5291 51.8268 63.298 9.7718 6.90877

CAGE analysis