Hb_001006_220

Information

Type -
Description -
Location Contig1006: 281781-282089
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11010g
description POPTRDRAFT_822033; hypothetical protein
nr
ID XP_012072408.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
swissprot
ID Q9SKC9
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=3 SV=1
trembl
ID A0A067KTF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04846 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00412: 276426-282211
cDNA
(Sanger)
(ID:Location)		 020_M05.ab1: 276494-282211 , 043_P14.ab1: 276494-282211

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_220 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
2 Hb_033413_010 0.1491545553 - - Reticuline oxidase precursor, putative [Ricinus communis]
3 Hb_026889_040 0.1973757633 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_088327_010 0.2090993496 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
5 Hb_091349_010 0.2096299587 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
6 Hb_000115_010 0.2139813343 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
7 Hb_001008_180 0.2156694833 - - -
8 Hb_007574_070 0.2209592174 - - fatty acid desaturase, putative [Ricinus communis]
9 Hb_000679_190 0.2220329277 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
10 Hb_004162_060 0.2229993894 - - unnamed protein product [Vitis vinifera]
11 Hb_000077_360 0.2233122952 - - sugar transporter, putative [Ricinus communis]
12 Hb_001481_130 0.2250705994 - - conserved hypothetical protein [Ricinus communis]
13 Hb_132840_070 0.2253570804 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
14 Hb_038564_010 0.2257081506 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
15 Hb_000849_060 0.2261622323 - - putative sodium-dependent transporter yocS [Morus notabilis]
16 Hb_000950_010 0.228704351 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
17 Hb_023827_020 0.2293941561 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
18 Hb_022593_010 0.2320860354 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
19 Hb_000173_440 0.2357502355 - - YALI0B05280p [Yarrowia lipolytica]
20 Hb_010577_010 0.2362746614 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]

Gene co-expression network

sample Hb_001006_220 Hb_001006_220 Hb_033413_010 Hb_033413_010 Hb_001006_220--Hb_033413_010 Hb_026889_040 Hb_026889_040 Hb_001006_220--Hb_026889_040 Hb_088327_010 Hb_088327_010 Hb_001006_220--Hb_088327_010 Hb_091349_010 Hb_091349_010 Hb_001006_220--Hb_091349_010 Hb_000115_010 Hb_000115_010 Hb_001006_220--Hb_000115_010 Hb_001008_180 Hb_001008_180 Hb_001006_220--Hb_001008_180 Hb_033413_010--Hb_026889_040 Hb_033413_010--Hb_091349_010 Hb_001481_130 Hb_001481_130 Hb_033413_010--Hb_001481_130 Hb_033413_010--Hb_088327_010 Hb_000703_280 Hb_000703_280 Hb_033413_010--Hb_000703_280 Hb_003878_050 Hb_003878_050 Hb_026889_040--Hb_003878_050 Hb_000019_180 Hb_000019_180 Hb_026889_040--Hb_000019_180 Hb_004158_020 Hb_004158_020 Hb_026889_040--Hb_004158_020 Hb_026889_040--Hb_091349_010 Hb_026889_040--Hb_000703_280 Hb_011861_100 Hb_011861_100 Hb_026889_040--Hb_011861_100 Hb_000946_110 Hb_000946_110 Hb_088327_010--Hb_000946_110 Hb_088327_010--Hb_091349_010 Hb_038564_010 Hb_038564_010 Hb_088327_010--Hb_038564_010 Hb_002043_040 Hb_002043_040 Hb_088327_010--Hb_002043_040 Hb_000704_040 Hb_000704_040 Hb_088327_010--Hb_000704_040 Hb_000381_010 Hb_000381_010 Hb_088327_010--Hb_000381_010 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_010577_010 Hb_010577_010 Hb_091349_010--Hb_010577_010 Hb_000107_110 Hb_000107_110 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_033152_070 Hb_033152_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030 Hb_000820_050 Hb_000820_050 Hb_000115_010--Hb_000820_050 Hb_000820_060 Hb_000820_060 Hb_000115_010--Hb_000820_060 Hb_000032_450 Hb_000032_450 Hb_000115_010--Hb_000032_450 Hb_000173_440 Hb_000173_440 Hb_000115_010--Hb_000173_440 Hb_006268_020 Hb_006268_020 Hb_000115_010--Hb_006268_020 Hb_000327_160 Hb_000327_160 Hb_001008_180--Hb_000327_160 Hb_000950_010 Hb_000950_010 Hb_001008_180--Hb_000950_010 Hb_002748_030 Hb_002748_030 Hb_001008_180--Hb_002748_030 Hb_006816_470 Hb_006816_470 Hb_001008_180--Hb_006816_470 Hb_008159_010 Hb_008159_010 Hb_001008_180--Hb_008159_010 Hb_002748_020 Hb_002748_020 Hb_001008_180--Hb_002748_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24054 7.74257 20.0977 237.76 11.0786 37.1386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8692 18.0709 158.908 105.322 88.9893

CAGE analysis