Hb_001006_260

Information

Type -
Description -
Location Contig1006: 308501-312788
Sequence    

Annotation

kegg
ID rcu:RCOM_0776150
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012072406.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
swissprot
ID Q38884
description Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2
trembl
ID A0A067KPU3
description Eukaryotic translation initiation factor 3 subunit I OS=Jatropha curcas GN=JCGZ_04844 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit i-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00418: 310775-311000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_260 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
2 Hb_002471_080 0.1201749703 - - oxidoreductase, putative [Ricinus communis]
3 Hb_000046_290 0.1221949951 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
4 Hb_001173_040 0.1230674197 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_010436_060 0.1251659438 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
6 Hb_020000_010 0.1265211568 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
7 Hb_001575_020 0.127456938 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009393_210 0.1280034104 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
9 Hb_011671_220 0.1303303649 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000976_360 0.1309028638 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
11 Hb_001141_280 0.1326432279 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
12 Hb_116898_010 0.1352358711 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
13 Hb_001616_060 0.1379360497 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
14 Hb_001083_020 0.1395723377 - - -
15 Hb_002603_160 0.1418836756 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
16 Hb_006641_010 0.1420807952 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
17 Hb_003147_050 0.1426928145 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000329_310 0.1440035506 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
19 Hb_000223_150 0.144362909 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
20 Hb_114336_020 0.1445180649 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_001006_260 Hb_001006_260 Hb_002471_080 Hb_002471_080 Hb_001006_260--Hb_002471_080 Hb_000046_290 Hb_000046_290 Hb_001006_260--Hb_000046_290 Hb_001173_040 Hb_001173_040 Hb_001006_260--Hb_001173_040 Hb_010436_060 Hb_010436_060 Hb_001006_260--Hb_010436_060 Hb_020000_010 Hb_020000_010 Hb_001006_260--Hb_020000_010 Hb_001575_020 Hb_001575_020 Hb_001006_260--Hb_001575_020 Hb_002471_080--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_002471_080--Hb_001360_050 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_124755_010 Hb_124755_010 Hb_002471_080--Hb_124755_010 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_000024_030 Hb_000024_030 Hb_002471_080--Hb_000024_030 Hb_027625_010 Hb_027625_010 Hb_000046_290--Hb_027625_010 Hb_001775_110 Hb_001775_110 Hb_000046_290--Hb_001775_110 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090 Hb_002539_090 Hb_002539_090 Hb_001173_040--Hb_002539_090 Hb_001258_080 Hb_001258_080 Hb_001173_040--Hb_001258_080 Hb_002028_130 Hb_002028_130 Hb_001173_040--Hb_002028_130 Hb_000172_030 Hb_000172_030 Hb_001173_040--Hb_000172_030 Hb_000751_130 Hb_000751_130 Hb_001173_040--Hb_000751_130 Hb_001008_010 Hb_001008_010 Hb_001173_040--Hb_001008_010 Hb_006641_010 Hb_006641_010 Hb_010436_060--Hb_006641_010 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_011671_220 Hb_011671_220 Hb_010436_060--Hb_011671_220 Hb_001235_030 Hb_001235_030 Hb_010436_060--Hb_001235_030 Hb_001073_050 Hb_001073_050 Hb_010436_060--Hb_001073_050 Hb_005117_010 Hb_005117_010 Hb_010436_060--Hb_005117_010 Hb_024714_010 Hb_024714_010 Hb_020000_010--Hb_024714_010 Hb_024185_020 Hb_024185_020 Hb_020000_010--Hb_024185_020 Hb_008554_070 Hb_008554_070 Hb_020000_010--Hb_008554_070 Hb_020000_010--Hb_001360_050 Hb_020000_010--Hb_011671_220 Hb_002759_060 Hb_002759_060 Hb_020000_010--Hb_002759_060 Hb_001616_060 Hb_001616_060 Hb_001575_020--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_002097_060 Hb_002097_060 Hb_001575_020--Hb_002097_060 Hb_000069_100 Hb_000069_100 Hb_001575_020--Hb_000069_100 Hb_000061_300 Hb_000061_300 Hb_001575_020--Hb_000061_300 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37392 0.450826 0.67061 0.805191 2.01536 6.36346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.69995 7.81935 9.11969 3.69667 3.69363

CAGE analysis