Hb_001006_280

Information

Type -
Description -
Location Contig1006: 356586-358726
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14070g
description POPTRDRAFT_766241; glutamate decarboxylase family protein
nr
ID XP_012072404.1
description PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
swissprot
ID Q9ZPS3
description Glutamate decarboxylase 4 OS=Arabidopsis thaliana GN=GAD4 PE=1 SV=1
trembl
ID A0A067KTE0
description Glutamate decarboxylase OS=Jatropha curcas GN=JCGZ_04841 PE=3 SV=1
Gene Ontology
ID GO:0004351
description glutamate decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_280 0.0 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
2 Hb_000034_030 0.0930454237 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_038670_010 0.1350497316 - - Major allergen Pru ar, putative [Ricinus communis]
4 Hb_001405_150 0.1442795426 - - PREDICTED: protein At-4/1 [Jatropha curcas]
5 Hb_043768_010 0.1446198163 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
6 Hb_000720_210 0.1569658499 - - carbonyl reductase, putative [Ricinus communis]
7 Hb_001365_050 0.1590370675 - - hypothetical protein POPTR_0019s128601g, partial [Populus trichocarpa]
8 Hb_000963_200 0.1593789626 - - beta-galactosidase, putative [Ricinus communis]
9 Hb_000403_110 0.160455766 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
10 Hb_008783_020 0.1632681381 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
11 Hb_008899_030 0.1642650577 - - Lipase class 3-related protein, putative [Theobroma cacao]
12 Hb_003987_030 0.1667106905 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
13 Hb_000527_140 0.1690126305 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
14 Hb_001018_080 0.1690276548 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006316_030 0.1700872597 - - aldehyde oxidase, putative [Ricinus communis]
16 Hb_010417_100 0.1731300902 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
17 Hb_005276_220 0.1755455042 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
18 Hb_011537_020 0.1768763555 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
19 Hb_011472_020 0.177732803 - - PREDICTED: mucin-17-like [Jatropha curcas]
20 Hb_000236_050 0.1799897181 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_001006_280 Hb_001006_280 Hb_000034_030 Hb_000034_030 Hb_001006_280--Hb_000034_030 Hb_038670_010 Hb_038670_010 Hb_001006_280--Hb_038670_010 Hb_001405_150 Hb_001405_150 Hb_001006_280--Hb_001405_150 Hb_043768_010 Hb_043768_010 Hb_001006_280--Hb_043768_010 Hb_000720_210 Hb_000720_210 Hb_001006_280--Hb_000720_210 Hb_001365_050 Hb_001365_050 Hb_001006_280--Hb_001365_050 Hb_000963_200 Hb_000963_200 Hb_000034_030--Hb_000963_200 Hb_000236_050 Hb_000236_050 Hb_000034_030--Hb_000236_050 Hb_000034_030--Hb_038670_010 Hb_005237_040 Hb_005237_040 Hb_000034_030--Hb_005237_040 Hb_000034_030--Hb_001405_150 Hb_008783_020 Hb_008783_020 Hb_038670_010--Hb_008783_020 Hb_000521_360 Hb_000521_360 Hb_038670_010--Hb_000521_360 Hb_005276_220 Hb_005276_220 Hb_038670_010--Hb_005276_220 Hb_000403_110 Hb_000403_110 Hb_038670_010--Hb_000403_110 Hb_002025_350 Hb_002025_350 Hb_001405_150--Hb_002025_350 Hb_001024_030 Hb_001024_030 Hb_001405_150--Hb_001024_030 Hb_001018_080 Hb_001018_080 Hb_001405_150--Hb_001018_080 Hb_000421_270 Hb_000421_270 Hb_001405_150--Hb_000421_270 Hb_002217_200 Hb_002217_200 Hb_043768_010--Hb_002217_200 Hb_043768_010--Hb_001365_050 Hb_043768_010--Hb_000034_030 Hb_003106_210 Hb_003106_210 Hb_043768_010--Hb_003106_210 Hb_003767_010 Hb_003767_010 Hb_043768_010--Hb_003767_010 Hb_107543_010 Hb_107543_010 Hb_000720_210--Hb_107543_010 Hb_006316_030 Hb_006316_030 Hb_000720_210--Hb_006316_030 Hb_052764_080 Hb_052764_080 Hb_000720_210--Hb_052764_080 Hb_000120_070 Hb_000120_070 Hb_000720_210--Hb_000120_070 Hb_001369_070 Hb_001369_070 Hb_000720_210--Hb_001369_070 Hb_074312_020 Hb_074312_020 Hb_000720_210--Hb_074312_020 Hb_001365_050--Hb_003106_210 Hb_001365_050--Hb_006316_030 Hb_000067_030 Hb_000067_030 Hb_001365_050--Hb_000067_030 Hb_007919_030 Hb_007919_030 Hb_001365_050--Hb_007919_030 Hb_000377_160 Hb_000377_160 Hb_001365_050--Hb_000377_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.60264 0.336865 0.235884 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.056359 0.0886823 0 0.830895 0.279284

CAGE analysis