Hb_001006_330

Information

Type -
Description -
Location Contig1006: 391059-399852
Sequence    

Annotation

kegg
ID rcu:RCOM_0776830
description sodium/hydrogen exchanger plant, putative
nr
ID XP_002521897.1
description sodium/hydrogen exchanger plant, putative [Ricinus communis]
swissprot
ID Q9LKW9
description Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1
trembl
ID B9S7C8
description Sodium/hydrogen exchanger plant, putative OS=Ricinus communis GN=RCOM_0776830 PE=4 SV=1
Gene Ontology
ID GO:0016021
description salt overly sensitive 1b isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00424: 391208-392070 , PASA_asmbl_00425: 392208-394656 , PASA_asmbl_00427: 394661-398500 , PASA_asmbl_00428: 398915-415459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_330 0.0 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
2 Hb_000696_230 0.0701117793 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
3 Hb_000011_100 0.0709673227 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
4 Hb_001821_160 0.0710939842 - - serine/arginine rich splicing factor, putative [Ricinus communis]
5 Hb_000441_120 0.071393997 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000816_250 0.071531489 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
7 Hb_000922_360 0.0721276803 - - -
8 Hb_005779_010 0.0737244003 - - catalytic, putative [Ricinus communis]
9 Hb_000975_040 0.0753453884 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
10 Hb_004267_040 0.0779932966 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
11 Hb_000165_040 0.0808115369 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
12 Hb_132840_010 0.0812054749 - - serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_000710_040 0.0837218174 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
14 Hb_005588_090 0.0837481919 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
15 Hb_138842_010 0.0848985875 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
16 Hb_005867_070 0.0849086641 - - DNA binding protein, putative [Ricinus communis]
17 Hb_183510_020 0.0863031428 - - coated vesicle membrane protein, putative [Ricinus communis]
18 Hb_000935_010 0.0863564959 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
19 Hb_004994_010 0.0867404707 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
20 Hb_003861_050 0.0867730985 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_330 Hb_001006_330 Hb_000696_230 Hb_000696_230 Hb_001006_330--Hb_000696_230 Hb_000011_100 Hb_000011_100 Hb_001006_330--Hb_000011_100 Hb_001821_160 Hb_001821_160 Hb_001006_330--Hb_001821_160 Hb_000441_120 Hb_000441_120 Hb_001006_330--Hb_000441_120 Hb_000816_250 Hb_000816_250 Hb_001006_330--Hb_000816_250 Hb_000922_360 Hb_000922_360 Hb_001006_330--Hb_000922_360 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090 Hb_004267_040 Hb_004267_040 Hb_000011_100--Hb_004267_040 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_001430_080 Hb_001430_080 Hb_000011_100--Hb_001430_080 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_006420_040 Hb_006420_040 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_014834_150 Hb_014834_150 Hb_000816_250--Hb_014834_150 Hb_000313_220 Hb_000313_220 Hb_000816_250--Hb_000313_220 Hb_002889_010 Hb_002889_010 Hb_000816_250--Hb_002889_010 Hb_005779_010 Hb_005779_010 Hb_000816_250--Hb_005779_010 Hb_001946_400 Hb_001946_400 Hb_000816_250--Hb_001946_400 Hb_000976_140 Hb_000976_140 Hb_000816_250--Hb_000976_140 Hb_000922_360--Hb_003464_090 Hb_011618_090 Hb_011618_090 Hb_000922_360--Hb_011618_090 Hb_000922_360--Hb_000011_100 Hb_003370_030 Hb_003370_030 Hb_000922_360--Hb_003370_030 Hb_000922_360--Hb_001430_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.95048 8.07191 8.32074 6.01758 10.5935 5.66256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27125 7.95701 5.57568 9.50436 7.38537

CAGE analysis