Hb_001007_080

Information

Type -
Description -
Location Contig1007: 64229-66355
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07410g
description POPTRDRAFT_816238; hypothetical protein
nr
ID XP_012066099.1
description PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
swissprot
ID Q23202
description Ribosome maturation protein SBDS OS=Caenorhabditis elegans GN=sbds-1 PE=3 SV=2
trembl
ID A0A067L741
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25254 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ribosome maturation protein sbds

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001007_080 0.0 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
2 Hb_010174_050 0.1467548594 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
3 Hb_003266_120 0.2714610699 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
4 Hb_000274_030 0.2744260355 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
5 Hb_011364_030 0.2946117973 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
6 Hb_000472_010 0.2971830295 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_006620_080 0.2985692172 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
8 Hb_021409_130 0.3016173643 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
9 Hb_000964_100 0.3173221826 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
10 Hb_001248_040 0.334437388 - - -
11 Hb_119960_010 0.3371343617 - - PREDICTED: pectinesterase-like [Populus euphratica]
12 Hb_043295_010 0.3382965815 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
13 Hb_007245_010 0.3383531537 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
14 Hb_000964_160 0.3402846581 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
15 Hb_011903_010 0.3448424406 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000347_090 0.3496363133 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
17 Hb_123560_030 0.3556675966 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_002545_030 0.3649327662 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000441_010 0.3680171947 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_014720_060 0.3684730483 - - hypothetical protein JCGZ_11469 [Jatropha curcas]

Gene co-expression network

sample Hb_001007_080 Hb_001007_080 Hb_010174_050 Hb_010174_050 Hb_001007_080--Hb_010174_050 Hb_003266_120 Hb_003266_120 Hb_001007_080--Hb_003266_120 Hb_000274_030 Hb_000274_030 Hb_001007_080--Hb_000274_030 Hb_011364_030 Hb_011364_030 Hb_001007_080--Hb_011364_030 Hb_000472_010 Hb_000472_010 Hb_001007_080--Hb_000472_010 Hb_006620_080 Hb_006620_080 Hb_001007_080--Hb_006620_080 Hb_019181_020 Hb_019181_020 Hb_010174_050--Hb_019181_020 Hb_120820_010 Hb_120820_010 Hb_010174_050--Hb_120820_010 Hb_043295_010 Hb_043295_010 Hb_010174_050--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_010174_050--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_010174_050--Hb_000964_160 Hb_003266_120--Hb_000274_030 Hb_003266_120--Hb_043295_010 Hb_003266_120--Hb_007245_010 Hb_003266_120--Hb_000964_160 Hb_001248_040 Hb_001248_040 Hb_003266_120--Hb_001248_040 Hb_021409_130 Hb_021409_130 Hb_003266_120--Hb_021409_130 Hb_000274_030--Hb_043295_010 Hb_000274_030--Hb_007245_010 Hb_000274_030--Hb_000964_160 Hb_000274_030--Hb_001248_040 Hb_002545_030 Hb_002545_030 Hb_000274_030--Hb_002545_030 Hb_011364_030--Hb_006620_080 Hb_119960_010 Hb_119960_010 Hb_011364_030--Hb_119960_010 Hb_009193_080 Hb_009193_080 Hb_011364_030--Hb_009193_080 Hb_032907_010 Hb_032907_010 Hb_011364_030--Hb_032907_010 Hb_003902_080 Hb_003902_080 Hb_011364_030--Hb_003902_080 Hb_000116_600 Hb_000116_600 Hb_011364_030--Hb_000116_600 Hb_004449_230 Hb_004449_230 Hb_000472_010--Hb_004449_230 Hb_000472_010--Hb_021409_130 Hb_000472_010--Hb_001248_040 Hb_000463_060 Hb_000463_060 Hb_000472_010--Hb_000463_060 Hb_123560_030 Hb_123560_030 Hb_000472_010--Hb_123560_030 Hb_006620_080--Hb_119960_010 Hb_006620_080--Hb_009193_080 Hb_006620_080--Hb_032907_010 Hb_006620_080--Hb_003902_080 Hb_006620_080--Hb_000116_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111678 0 0.0208798 0.0215127 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis