Hb_001008_010

Information

Type -
Description -
Location Contig1008: 16743-25442
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07990g
description hypothetical protein
nr
ID XP_011019937.1
description PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
swissprot
ID B9M6G9
description 30S ribosomal protein S17 OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN=rpsQ PE=3 SV=1
trembl
ID U5G619
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07990g PE=3 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00467: 17482-17761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_010 0.0 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
2 Hb_001629_100 0.097105398 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
3 Hb_001173_040 0.0974291213 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_012265_010 0.1046138435 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
5 Hb_010172_030 0.1077980262 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
6 Hb_002539_090 0.1111898776 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
7 Hb_001754_010 0.1121844866 - - translationally controlled tumor protein [Hevea brasiliensis]
8 Hb_002028_130 0.1185716707 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
9 Hb_100777_010 0.118775015 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
10 Hb_130291_010 0.1214029641 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
11 Hb_004041_040 0.1243921057 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
12 Hb_012395_200 0.1262688154 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007594_090 0.1275029229 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
14 Hb_003086_100 0.1290222076 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
15 Hb_000684_160 0.1296243563 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
16 Hb_000567_170 0.1309837514 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
17 Hb_010812_010 0.134199359 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
18 Hb_000722_040 0.1342346267 - - -
19 Hb_000865_070 0.1346956784 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
20 Hb_000085_330 0.1349809258 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]

Gene co-expression network

sample Hb_001008_010 Hb_001008_010 Hb_001629_100 Hb_001629_100 Hb_001008_010--Hb_001629_100 Hb_001173_040 Hb_001173_040 Hb_001008_010--Hb_001173_040 Hb_012265_010 Hb_012265_010 Hb_001008_010--Hb_012265_010 Hb_010172_030 Hb_010172_030 Hb_001008_010--Hb_010172_030 Hb_002539_090 Hb_002539_090 Hb_001008_010--Hb_002539_090 Hb_001754_010 Hb_001754_010 Hb_001008_010--Hb_001754_010 Hb_001629_100--Hb_001754_010 Hb_130291_010 Hb_130291_010 Hb_001629_100--Hb_130291_010 Hb_000120_590 Hb_000120_590 Hb_001629_100--Hb_000120_590 Hb_098315_120 Hb_098315_120 Hb_001629_100--Hb_098315_120 Hb_100777_010 Hb_100777_010 Hb_001629_100--Hb_100777_010 Hb_001173_040--Hb_002539_090 Hb_001258_080 Hb_001258_080 Hb_001173_040--Hb_001258_080 Hb_002028_130 Hb_002028_130 Hb_001173_040--Hb_002028_130 Hb_000172_030 Hb_000172_030 Hb_001173_040--Hb_000172_030 Hb_000751_130 Hb_000751_130 Hb_001173_040--Hb_000751_130 Hb_003086_100 Hb_003086_100 Hb_012265_010--Hb_003086_100 Hb_001433_050 Hb_001433_050 Hb_012265_010--Hb_001433_050 Hb_012265_010--Hb_130291_010 Hb_148930_010 Hb_148930_010 Hb_012265_010--Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_012265_010--Hb_002835_320 Hb_012265_010--Hb_010172_030 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_000362_210 Hb_000362_210 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_002539_090--Hb_001258_080 Hb_002539_090--Hb_000751_130 Hb_007594_090 Hb_007594_090 Hb_002539_090--Hb_007594_090 Hb_001357_080 Hb_001357_080 Hb_002539_090--Hb_001357_080 Hb_002539_090--Hb_000172_030 Hb_001754_010--Hb_000120_590 Hb_001754_010--Hb_100777_010 Hb_001754_010--Hb_130291_010 Hb_001754_010--Hb_000333_090 Hb_001754_010--Hb_010172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2526 1.96271 3.55313 8.1661 21.918 51.4935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.2134 80.8359 51.0217 19.4677 7.81617

CAGE analysis