Hb_001008_020

Information

Type -
Description -
Location Contig1008: 30397-32961
Sequence    

Annotation

kegg
ID rcu:RCOM_0449300
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002532759.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9FN94
description Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1
trembl
ID B9T3E0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0449300 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_056506_010 0.0577223476 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
3 Hb_007137_020 0.0992981718 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_085010_010 0.1456159871 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
5 Hb_000866_390 0.1480680146 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
6 Hb_003649_030 0.1493710696 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
7 Hb_000044_050 0.1724175301 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
8 Hb_008195_020 0.1752835027 - - Vacuolar-processing enzyme precursor [Ricinus communis]
9 Hb_009898_060 0.1756911932 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
10 Hb_011470_010 0.1758129313 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
11 Hb_002973_130 0.1825556597 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
12 Hb_003176_020 0.1866769925 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
13 Hb_000061_110 0.1926517571 - - -
14 Hb_000417_150 0.1948685635 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
15 Hb_000603_120 0.1961076494 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
16 Hb_005306_020 0.1970530428 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
17 Hb_000286_180 0.1988985189 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
18 Hb_020817_030 0.2010341995 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
19 Hb_026053_030 0.2039138725 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
20 Hb_011432_010 0.2058083218 - - hypothetical protein JCGZ_23781 [Jatropha curcas]

Gene co-expression network

sample Hb_001008_020 Hb_001008_020 Hb_056506_010 Hb_056506_010 Hb_001008_020--Hb_056506_010 Hb_007137_020 Hb_007137_020 Hb_001008_020--Hb_007137_020 Hb_085010_010 Hb_085010_010 Hb_001008_020--Hb_085010_010 Hb_000866_390 Hb_000866_390 Hb_001008_020--Hb_000866_390 Hb_003649_030 Hb_003649_030 Hb_001008_020--Hb_003649_030 Hb_000044_050 Hb_000044_050 Hb_001008_020--Hb_000044_050 Hb_056506_010--Hb_007137_020 Hb_009898_060 Hb_009898_060 Hb_056506_010--Hb_009898_060 Hb_056506_010--Hb_003649_030 Hb_000061_110 Hb_000061_110 Hb_056506_010--Hb_000061_110 Hb_056506_010--Hb_000044_050 Hb_001989_080 Hb_001989_080 Hb_007137_020--Hb_001989_080 Hb_000286_180 Hb_000286_180 Hb_007137_020--Hb_000286_180 Hb_000392_510 Hb_000392_510 Hb_007137_020--Hb_000392_510 Hb_007137_020--Hb_009898_060 Hb_011470_010 Hb_011470_010 Hb_085010_010--Hb_011470_010 Hb_008111_010 Hb_008111_010 Hb_085010_010--Hb_008111_010 Hb_126466_010 Hb_126466_010 Hb_085010_010--Hb_126466_010 Hb_002272_070 Hb_002272_070 Hb_085010_010--Hb_002272_070 Hb_001971_020 Hb_001971_020 Hb_085010_010--Hb_001971_020 Hb_005306_020 Hb_005306_020 Hb_085010_010--Hb_005306_020 Hb_004713_050 Hb_004713_050 Hb_000866_390--Hb_004713_050 Hb_000866_390--Hb_003649_030 Hb_000866_390--Hb_085010_010 Hb_000059_080 Hb_000059_080 Hb_000866_390--Hb_000059_080 Hb_000866_390--Hb_001971_020 Hb_001411_100 Hb_001411_100 Hb_000866_390--Hb_001411_100 Hb_003649_030--Hb_000061_110 Hb_003649_030--Hb_009898_060 Hb_003649_030--Hb_001411_100 Hb_026053_030 Hb_026053_030 Hb_000044_050--Hb_026053_030 Hb_008195_020 Hb_008195_020 Hb_000044_050--Hb_008195_020 Hb_000044_050--Hb_001989_080 Hb_004007_230 Hb_004007_230 Hb_000044_050--Hb_004007_230 Hb_000417_150 Hb_000417_150 Hb_000044_050--Hb_000417_150 Hb_004143_140 Hb_004143_140 Hb_000044_050--Hb_004143_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.149341 0 0.0550205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0433251 0.107342

CAGE analysis