Hb_001008_050

Information

Type -
Description -
Location Contig1008: 47567-54577
Sequence    

Annotation

kegg
ID rcu:RCOM_0897990
description hypothetical protein
nr
ID XP_012073234.1
description PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
swissprot
ID Q15061
description WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3
trembl
ID B9RV14
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0897990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00469: 52502-53279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_050 0.0 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
2 Hb_000320_470 0.0690903399 - - calcium-dependent protein kinase [Hevea brasiliensis]
3 Hb_000181_100 0.0759012084 - - PREDICTED: protein starmaker [Jatropha curcas]
4 Hb_002391_050 0.0788300567 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
5 Hb_001935_160 0.0817835348 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
6 Hb_001008_070 0.0820827821 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
7 Hb_089246_010 0.086102671 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
8 Hb_156850_090 0.0875012657 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_007035_040 0.0897141408 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
10 Hb_000103_570 0.0939410598 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
11 Hb_012055_110 0.0951966054 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
12 Hb_031091_020 0.0952038891 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_085742_010 0.0957623631 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
14 Hb_004064_050 0.0966882198 - - Structural maintenance of chromosome, putative [Ricinus communis]
15 Hb_000196_060 0.0994143394 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
16 Hb_000175_410 0.0995173338 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
17 Hb_041327_020 0.1001743041 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001085_290 0.1002016796 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
19 Hb_000011_270 0.1007900928 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
20 Hb_000878_160 0.1011557815 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001008_050 Hb_001008_050 Hb_000320_470 Hb_000320_470 Hb_001008_050--Hb_000320_470 Hb_000181_100 Hb_000181_100 Hb_001008_050--Hb_000181_100 Hb_002391_050 Hb_002391_050 Hb_001008_050--Hb_002391_050 Hb_001935_160 Hb_001935_160 Hb_001008_050--Hb_001935_160 Hb_001008_070 Hb_001008_070 Hb_001008_050--Hb_001008_070 Hb_089246_010 Hb_089246_010 Hb_001008_050--Hb_089246_010 Hb_000320_470--Hb_000181_100 Hb_026053_040 Hb_026053_040 Hb_000320_470--Hb_026053_040 Hb_000320_470--Hb_001008_070 Hb_031091_020 Hb_031091_020 Hb_000320_470--Hb_031091_020 Hb_000320_470--Hb_089246_010 Hb_004800_180 Hb_004800_180 Hb_000181_100--Hb_004800_180 Hb_000181_100--Hb_001008_070 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_000181_100--Hb_026053_040 Hb_000181_100--Hb_031091_020 Hb_000196_060 Hb_000196_060 Hb_002391_050--Hb_000196_060 Hb_015978_100 Hb_015978_100 Hb_002391_050--Hb_015978_100 Hb_002391_050--Hb_001935_160 Hb_000925_090 Hb_000925_090 Hb_002391_050--Hb_000925_090 Hb_003124_100 Hb_003124_100 Hb_002391_050--Hb_003124_100 Hb_000941_030 Hb_000941_030 Hb_001935_160--Hb_000941_030 Hb_012055_110 Hb_012055_110 Hb_001935_160--Hb_012055_110 Hb_002475_040 Hb_002475_040 Hb_001935_160--Hb_002475_040 Hb_000027_050 Hb_000027_050 Hb_001935_160--Hb_000027_050 Hb_000066_150 Hb_000066_150 Hb_001935_160--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_001935_160--Hb_000879_040 Hb_002581_010 Hb_002581_010 Hb_001008_070--Hb_002581_010 Hb_017469_110 Hb_017469_110 Hb_001008_070--Hb_017469_110 Hb_000795_040 Hb_000795_040 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_089246_010--Hb_001008_070 Hb_089246_010--Hb_000181_100 Hb_089246_010--Hb_031091_020 Hb_000022_190 Hb_000022_190 Hb_089246_010--Hb_000022_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97523 4.9957 5.68598 4.17665 3.16151 4.51924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17723 1.5389 2.01939 5.02187 7.57843

CAGE analysis