Hb_001008_060

Information

Type -
Description -
Location Contig1008: 55218-58771
Sequence    

Annotation

kegg
ID rcu:RCOM_0897960
description Monothiol glutaredoxin-4, putative
nr
ID XP_012073235.1
description PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
swissprot
ID Q8LBK6
description Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2
trembl
ID A0A067KQ55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06184 PE=4 SV=1
Gene Ontology
ID GO:0005623
description monothiol glutaredoxin- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00470: 55078-58741 , PASA_asmbl_00471: 56972-57239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_060 0.0 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
2 Hb_009711_030 0.0546883159 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
3 Hb_002078_450 0.0659111662 - - nuclear transport factor, putative [Ricinus communis]
4 Hb_022250_040 0.0740920291 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
5 Hb_000085_320 0.0741326767 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
6 Hb_011794_070 0.0741821901 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
7 Hb_000703_140 0.0753630204 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
8 Hb_009773_020 0.07623698 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
9 Hb_000200_100 0.0765268128 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
10 Hb_000376_050 0.0781697052 - - polyadenylate-binding protein, putative [Ricinus communis]
11 Hb_004837_140 0.078286879 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
12 Hb_125000_010 0.0786869857 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
13 Hb_071736_020 0.0790332047 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
14 Hb_000329_040 0.0801330023 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
15 Hb_002078_150 0.0803890116 - - protein with unknown function [Ricinus communis]
16 Hb_000174_090 0.0804751378 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
17 Hb_000832_140 0.082206711 - - actin depolymerizing factor 4 [Hevea brasiliensis]
18 Hb_000205_270 0.0831518027 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
19 Hb_002097_110 0.0839606018 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_004662_030 0.0843512929 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]

Gene co-expression network

sample Hb_001008_060 Hb_001008_060 Hb_009711_030 Hb_009711_030 Hb_001008_060--Hb_009711_030 Hb_002078_450 Hb_002078_450 Hb_001008_060--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_001008_060--Hb_022250_040 Hb_000085_320 Hb_000085_320 Hb_001008_060--Hb_000085_320 Hb_011794_070 Hb_011794_070 Hb_001008_060--Hb_011794_070 Hb_000703_140 Hb_000703_140 Hb_001008_060--Hb_000703_140 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_000371_080 Hb_000371_080 Hb_009711_030--Hb_000371_080 Hb_001824_070 Hb_001824_070 Hb_009711_030--Hb_001824_070 Hb_002097_110 Hb_002097_110 Hb_009711_030--Hb_002097_110 Hb_071736_020 Hb_071736_020 Hb_002078_450--Hb_071736_020 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_000086_570 Hb_000086_570 Hb_002078_450--Hb_000086_570 Hb_002078_450--Hb_009711_030 Hb_001718_100 Hb_001718_100 Hb_002078_450--Hb_001718_100 Hb_002078_450--Hb_022250_040 Hb_022250_040--Hb_000371_080 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_022250_040--Hb_125000_010 Hb_002874_190 Hb_002874_190 Hb_000085_320--Hb_002874_190 Hb_000007_100 Hb_000007_100 Hb_000085_320--Hb_000007_100 Hb_004032_100 Hb_004032_100 Hb_000085_320--Hb_004032_100 Hb_001383_060 Hb_001383_060 Hb_000085_320--Hb_001383_060 Hb_000380_190 Hb_000380_190 Hb_000085_320--Hb_000380_190 Hb_000329_040 Hb_000329_040 Hb_011794_070--Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_011794_070--Hb_000260_080 Hb_011794_070--Hb_000703_140 Hb_000883_050 Hb_000883_050 Hb_011794_070--Hb_000883_050 Hb_011794_070--Hb_022250_040 Hb_004108_230 Hb_004108_230 Hb_011794_070--Hb_004108_230 Hb_000703_140--Hb_000260_080 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_000703_140--Hb_000883_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.5757 20.1885 16.2928 42.5865 71.9671 73.3697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.4874 115.823 88.4007 35.2299 14.269

CAGE analysis