Hb_001008_130

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1008: 128897-135566
Sequence    

Annotation

kegg
ID pda:103711844
description cytochrome c1-2, heme protein, mitochondrial-like
nr
ID XP_010940717.1
description PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
swissprot
ID P25076
description Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1
trembl
ID A0A0D2S024
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G100700 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cytochrome c1- heme mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00497: 128987-136543
cDNA
(Sanger)
(ID:Location)		 047_B22r.ab1: 134969-135678

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_130 0.0 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
2 Hb_033312_130 0.054191011 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
3 Hb_006210_010 0.0575047833 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
4 Hb_006100_020 0.0618920344 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
5 Hb_048476_080 0.0621007977 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
6 Hb_003680_020 0.0682859762 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_000960_080 0.0684394338 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
8 Hb_000169_020 0.0724191495 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
9 Hb_001141_240 0.0756279189 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
10 Hb_000844_050 0.0764821586 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
11 Hb_003849_280 0.0765079855 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
12 Hb_002686_230 0.0773849668 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_003417_040 0.0773911723 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
14 Hb_006663_060 0.0786291181 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
15 Hb_001511_090 0.0795185541 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
16 Hb_000340_040 0.0797572123 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
17 Hb_000300_030 0.0802114992 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
18 Hb_000059_240 0.0813069005 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
19 Hb_009288_020 0.081886626 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
20 Hb_001507_050 0.0820583453 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001008_130 Hb_001008_130 Hb_033312_130 Hb_033312_130 Hb_001008_130--Hb_033312_130 Hb_006210_010 Hb_006210_010 Hb_001008_130--Hb_006210_010 Hb_006100_020 Hb_006100_020 Hb_001008_130--Hb_006100_020 Hb_048476_080 Hb_048476_080 Hb_001008_130--Hb_048476_080 Hb_003680_020 Hb_003680_020 Hb_001008_130--Hb_003680_020 Hb_000960_080 Hb_000960_080 Hb_001008_130--Hb_000960_080 Hb_003929_210 Hb_003929_210 Hb_033312_130--Hb_003929_210 Hb_033312_130--Hb_006100_020 Hb_033312_130--Hb_000960_080 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_002357_070 Hb_002357_070 Hb_033312_130--Hb_002357_070 Hb_006663_060 Hb_006663_060 Hb_006210_010--Hb_006663_060 Hb_000059_240 Hb_000059_240 Hb_006210_010--Hb_000059_240 Hb_006210_010--Hb_003680_020 Hb_001141_240 Hb_001141_240 Hb_006210_010--Hb_001141_240 Hb_001811_170 Hb_001811_170 Hb_006210_010--Hb_001811_170 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_006100_020--Hb_001141_240 Hb_006100_020--Hb_048476_080 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_000844_050 Hb_000844_050 Hb_048476_080--Hb_000844_050 Hb_003661_010 Hb_003661_010 Hb_048476_080--Hb_003661_010 Hb_000103_290 Hb_000103_290 Hb_048476_080--Hb_000103_290 Hb_001507_050 Hb_001507_050 Hb_048476_080--Hb_001507_050 Hb_003680_020--Hb_000960_080 Hb_003680_020--Hb_000844_050 Hb_003680_020--Hb_001507_050 Hb_003680_020--Hb_003661_010 Hb_003680_020--Hb_048476_080 Hb_003680_020--Hb_000059_240 Hb_000960_080--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_000960_080--Hb_000318_150 Hb_000270_170 Hb_000270_170 Hb_000960_080--Hb_000270_170 Hb_000960_080--Hb_000059_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5473 26.34 19.9818 23.8782 8.90449 9.92574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1473 13.0582 8.68545 18.8323 31.8744

CAGE analysis