Hb_001008_140

Information

Type -
Description -
Location Contig1008: 138928-139599
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00498: 137801-139496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_140 0.0 - - -
2 Hb_003799_020 0.2624529367 - - hypothetical protein VITISV_003261 [Vitis vinifera]
3 Hb_007547_020 0.2877627019 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
4 Hb_001221_280 0.3168883777 - - -
5 Hb_000856_160 0.3212506142 - - -
6 Hb_003659_020 0.3225168353 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_008035_050 0.3236644922 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
8 Hb_139691_010 0.3260820994 - - -
9 Hb_001287_010 0.3313086472 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
10 Hb_000392_290 0.3418227819 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_012338_020 0.3468151197 - - -
12 Hb_098785_010 0.3505094659 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_032202_150 0.3528625061 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
14 Hb_001789_170 0.3600670509 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
15 Hb_000302_210 0.3613735224 - - conserved hypothetical protein [Ricinus communis]
16 Hb_043623_020 0.3643342514 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
17 Hb_001143_260 0.3645126907 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
18 Hb_000321_130 0.3685362633 - - Alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_005066_080 0.3712733398 - - hypothetical protein PRUPE_ppa025081mg [Prunus persica]
20 Hb_002498_130 0.3769098392 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]

Gene co-expression network

sample Hb_001008_140 Hb_001008_140 Hb_003799_020 Hb_003799_020 Hb_001008_140--Hb_003799_020 Hb_007547_020 Hb_007547_020 Hb_001008_140--Hb_007547_020 Hb_001221_280 Hb_001221_280 Hb_001008_140--Hb_001221_280 Hb_000856_160 Hb_000856_160 Hb_001008_140--Hb_000856_160 Hb_003659_020 Hb_003659_020 Hb_001008_140--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_001008_140--Hb_008035_050 Hb_003747_110 Hb_003747_110 Hb_003799_020--Hb_003747_110 Hb_000302_210 Hb_000302_210 Hb_003799_020--Hb_000302_210 Hb_003799_020--Hb_001221_280 Hb_098785_010 Hb_098785_010 Hb_003799_020--Hb_098785_010 Hb_006788_080 Hb_006788_080 Hb_003799_020--Hb_006788_080 Hb_012338_020 Hb_012338_020 Hb_007547_020--Hb_012338_020 Hb_004324_160 Hb_004324_160 Hb_007547_020--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_007547_020--Hb_000321_130 Hb_011249_040 Hb_011249_040 Hb_007547_020--Hb_011249_040 Hb_103604_010 Hb_103604_010 Hb_007547_020--Hb_103604_010 Hb_043623_020 Hb_043623_020 Hb_001221_280--Hb_043623_020 Hb_001143_260 Hb_001143_260 Hb_001221_280--Hb_001143_260 Hb_001221_280--Hb_098785_010 Hb_006569_070 Hb_006569_070 Hb_001221_280--Hb_006569_070 Hb_001221_280--Hb_000856_160 Hb_000856_160--Hb_003659_020 Hb_000856_160--Hb_008035_050 Hb_139691_010 Hb_139691_010 Hb_000856_160--Hb_139691_010 Hb_000392_290 Hb_000392_290 Hb_000856_160--Hb_000392_290 Hb_001789_170 Hb_001789_170 Hb_000856_160--Hb_001789_170 Hb_002999_040 Hb_002999_040 Hb_000856_160--Hb_002999_040 Hb_003659_020--Hb_008035_050 Hb_003659_020--Hb_139691_010 Hb_003659_020--Hb_000392_290 Hb_003659_020--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_003659_020--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_003659_020--Hb_000781_050 Hb_008035_050--Hb_139691_010 Hb_008035_050--Hb_000392_290 Hb_008035_050--Hb_001789_170 Hb_008035_050--Hb_002498_130 Hb_008035_050--Hb_000781_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.06442 0.483113 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.13733 0.673002 0.0581407 0

CAGE analysis