Hb_001009_040

Information

Type -
Description -
Location Contig1009: 11836-14223
Sequence    

Annotation

kegg
ID egr:104424607
description mitochondrial pyruvate carrier 1-like
nr
ID XP_012079872.1
description PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
swissprot
ID Q949R9
description Mitochondrial pyruvate carrier 1 OS=Arabidopsis thaliana GN=MPC1 PE=3 SV=1
trembl
ID A0A067K7E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11324 PE=4 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial pyruvate carrier 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00514: 11896-14425
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_040 0.0 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
2 Hb_000169_010 0.067698007 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
3 Hb_005389_150 0.0747162933 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000808_040 0.0799373006 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
5 Hb_061908_010 0.08429977 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
6 Hb_001158_220 0.0859937869 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
7 Hb_008406_160 0.0860529499 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
8 Hb_005016_170 0.088841055 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000997_060 0.0894651381 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
10 Hb_123475_010 0.0902317804 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
11 Hb_002232_170 0.0922211735 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
12 Hb_003392_040 0.0936498808 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
13 Hb_000179_170 0.0944262883 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
14 Hb_002475_160 0.096233853 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
15 Hb_003874_020 0.0995421136 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
16 Hb_070739_010 0.0997748943 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
17 Hb_001135_050 0.0998091788 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
18 Hb_007919_060 0.0998946464 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
19 Hb_076787_010 0.1011126407 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
20 Hb_000258_410 0.101378164 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]

Gene co-expression network

sample Hb_001009_040 Hb_001009_040 Hb_000169_010 Hb_000169_010 Hb_001009_040--Hb_000169_010 Hb_005389_150 Hb_005389_150 Hb_001009_040--Hb_005389_150 Hb_000808_040 Hb_000808_040 Hb_001009_040--Hb_000808_040 Hb_061908_010 Hb_061908_010 Hb_001009_040--Hb_061908_010 Hb_001158_220 Hb_001158_220 Hb_001009_040--Hb_001158_220 Hb_008406_160 Hb_008406_160 Hb_001009_040--Hb_008406_160 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_000169_010--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_003266_050 Hb_003266_050 Hb_005389_150--Hb_003266_050 Hb_005389_150--Hb_000169_010 Hb_003011_040 Hb_003011_040 Hb_005389_150--Hb_003011_040 Hb_001269_320 Hb_001269_320 Hb_005389_150--Hb_001269_320 Hb_010691_060 Hb_010691_060 Hb_005389_150--Hb_010691_060 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_015941_030 Hb_015941_030 Hb_000808_040--Hb_015941_030 Hb_086639_070 Hb_086639_070 Hb_000808_040--Hb_086639_070 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180 Hb_123475_010 Hb_123475_010 Hb_061908_010--Hb_123475_010 Hb_000956_030 Hb_000956_030 Hb_061908_010--Hb_000956_030 Hb_061908_010--Hb_001158_220 Hb_000120_500 Hb_000120_500 Hb_061908_010--Hb_000120_500 Hb_002475_160 Hb_002475_160 Hb_061908_010--Hb_002475_160 Hb_005016_170 Hb_005016_170 Hb_001158_220--Hb_005016_170 Hb_001158_220--Hb_002475_160 Hb_007643_050 Hb_007643_050 Hb_001158_220--Hb_007643_050 Hb_002107_160 Hb_002107_160 Hb_001158_220--Hb_002107_160 Hb_001380_020 Hb_001380_020 Hb_001158_220--Hb_001380_020 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_008406_160--Hb_015941_030 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.392 46.6522 44.5629 55.1679 133.677 175.701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
202.801 124.222 48.6253 70.0648 25.7491

CAGE analysis