Hb_001009_050

Information

Type -
Description -
Location Contig1009: 14812-20039
Sequence    

Annotation

kegg
ID rcu:RCOM_1506850
description WD-repeat protein, putative
nr
ID XP_012079875.1
description PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
swissprot
ID Q58D06
description WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1
trembl
ID A0A067KGH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11325 PE=4 SV=1
Gene Ontology
ID GO:0080008
description transducin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00515: 15136-19411 , PASA_asmbl_00516: 19680-19997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_050 0.0 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
2 Hb_018663_020 0.0648448082 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
3 Hb_000270_450 0.06581675 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
4 Hb_001623_550 0.0760147344 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
5 Hb_001975_070 0.076592703 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
6 Hb_025048_040 0.0801359076 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
7 Hb_009615_110 0.0817828936 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_000318_140 0.0818743181 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
9 Hb_160818_010 0.0844246781 - - -
10 Hb_153547_010 0.0866897787 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
11 Hb_054380_010 0.0871194486 - - -
12 Hb_002169_010 0.0900607212 - - PREDICTED: la-related protein 6B [Jatropha curcas]
13 Hb_000331_480 0.090619964 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
14 Hb_000172_550 0.0911231632 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
15 Hb_005147_110 0.0921738335 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
16 Hb_002820_040 0.0946430493 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003384_030 0.095577211 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
18 Hb_005914_230 0.096299086 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
19 Hb_000212_280 0.0964567115 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
20 Hb_004032_350 0.096521512 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_001009_050 Hb_001009_050 Hb_018663_020 Hb_018663_020 Hb_001009_050--Hb_018663_020 Hb_000270_450 Hb_000270_450 Hb_001009_050--Hb_000270_450 Hb_001623_550 Hb_001623_550 Hb_001009_050--Hb_001623_550 Hb_001975_070 Hb_001975_070 Hb_001009_050--Hb_001975_070 Hb_025048_040 Hb_025048_040 Hb_001009_050--Hb_025048_040 Hb_009615_110 Hb_009615_110 Hb_001009_050--Hb_009615_110 Hb_005914_230 Hb_005914_230 Hb_018663_020--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_001969_040 Hb_001969_040 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001140_080 Hb_001140_080 Hb_000270_450--Hb_001140_080 Hb_000270_450--Hb_025048_040 Hb_000270_450--Hb_009615_110 Hb_005016_030 Hb_005016_030 Hb_000270_450--Hb_005016_030 Hb_000320_440 Hb_000320_440 Hb_000270_450--Hb_000320_440 Hb_001623_550--Hb_018663_020 Hb_002169_010 Hb_002169_010 Hb_001623_550--Hb_002169_010 Hb_000186_280 Hb_000186_280 Hb_001623_550--Hb_000186_280 Hb_011496_010 Hb_011496_010 Hb_001623_550--Hb_011496_010 Hb_001623_550--Hb_001969_040 Hb_005147_110 Hb_005147_110 Hb_001975_070--Hb_005147_110 Hb_000029_160 Hb_000029_160 Hb_001975_070--Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_001975_070--Hb_002960_060 Hb_001341_030 Hb_001341_030 Hb_001975_070--Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001975_070--Hb_000373_270 Hb_000212_280 Hb_000212_280 Hb_025048_040--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_025048_040--Hb_000331_480 Hb_012760_200 Hb_012760_200 Hb_025048_040--Hb_012760_200 Hb_005028_010 Hb_005028_010 Hb_025048_040--Hb_005028_010 Hb_009615_110--Hb_000318_140 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.5789 30.5707 9.32813 6.96262 83.0508 85.265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2865 29.0404 21.5614 25.2436 5.131

CAGE analysis