Hb_001009_090

Information

Type -
Description -
Location Contig1009: 43040-48325
Sequence    

Annotation

kegg
ID rcu:RCOM_1506890
description cdk10/11, putative (EC:2.7.11.23)
nr
ID AFC88295.1
description CDK protein [Hevea brasiliensis]
swissprot
ID Q7XUF4
description Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2
trembl
ID A0A0A6Z560
description CDK protein OS=Hevea brasiliensis GN=CDK1 PE=2 SV=1
Gene Ontology
ID GO:0004672
description cyclin-dependent kinase g-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00519: 43857-48460 , PASA_asmbl_00521: 42852-44126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_090 0.0 - - CDK protein [Hevea brasiliensis]
2 Hb_001410_130 0.0656351151 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
3 Hb_004526_010 0.0836896621 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
4 Hb_000163_230 0.0859310012 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
5 Hb_000941_080 0.086384763 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
6 Hb_005649_090 0.0904229423 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
7 Hb_000186_200 0.0916472602 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
8 Hb_003078_030 0.0923844458 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
9 Hb_002897_050 0.0927025562 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
10 Hb_000421_110 0.0942132748 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
11 Hb_000056_300 0.0970060516 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
12 Hb_000045_260 0.0981640079 - - protein with unknown function [Ricinus communis]
13 Hb_006054_030 0.1006878078 - - PREDICTED: protein GPR107-like [Jatropha curcas]
14 Hb_006738_050 0.1026603092 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
15 Hb_001369_780 0.1027880886 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002119_090 0.1034809719 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
17 Hb_000454_140 0.1035856847 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
18 Hb_000608_280 0.1054920343 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
19 Hb_004319_050 0.1058245692 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
20 Hb_000134_340 0.1064864479 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001009_090 Hb_001009_090 Hb_001410_130 Hb_001410_130 Hb_001009_090--Hb_001410_130 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_000163_230 Hb_000163_230 Hb_001009_090--Hb_000163_230 Hb_000941_080 Hb_000941_080 Hb_001009_090--Hb_000941_080 Hb_005649_090 Hb_005649_090 Hb_001009_090--Hb_005649_090 Hb_000186_200 Hb_000186_200 Hb_001009_090--Hb_000186_200 Hb_001410_130--Hb_000941_080 Hb_001911_010 Hb_001911_010 Hb_001410_130--Hb_001911_010 Hb_006054_030 Hb_006054_030 Hb_001410_130--Hb_006054_030 Hb_002119_090 Hb_002119_090 Hb_001410_130--Hb_002119_090 Hb_044653_020 Hb_044653_020 Hb_001410_130--Hb_044653_020 Hb_004319_050 Hb_004319_050 Hb_004526_010--Hb_004319_050 Hb_000796_120 Hb_000796_120 Hb_004526_010--Hb_000796_120 Hb_030545_030 Hb_030545_030 Hb_004526_010--Hb_030545_030 Hb_003992_180 Hb_003992_180 Hb_004526_010--Hb_003992_180 Hb_009486_160 Hb_009486_160 Hb_004526_010--Hb_009486_160 Hb_159295_010 Hb_159295_010 Hb_004526_010--Hb_159295_010 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_000045_260 Hb_000045_260 Hb_000163_230--Hb_000045_260 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000163_230--Hb_000186_200 Hb_000941_080--Hb_006054_030 Hb_000941_080--Hb_001911_010 Hb_000941_080--Hb_002119_090 Hb_000270_230 Hb_000270_230 Hb_000941_080--Hb_000270_230 Hb_004195_120 Hb_004195_120 Hb_005649_090--Hb_004195_120 Hb_000056_300 Hb_000056_300 Hb_005649_090--Hb_000056_300 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_003226_110 Hb_003226_110 Hb_005649_090--Hb_003226_110 Hb_005649_090--Hb_030545_030 Hb_002701_210 Hb_002701_210 Hb_000186_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_000186_200--Hb_000084_240 Hb_000186_200--Hb_003078_030 Hb_000186_200--Hb_000045_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3691 68.7277 37.4964 28.0123 15.5109 15.4105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.06326 8.64512 13.4966 16.7209 12.4843

CAGE analysis