Hb_001009_100

Information

Type -
Description -
Location Contig1009: 57691-59058
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_100 0.0 - - -
2 Hb_003388_030 0.0997108888 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
3 Hb_004884_020 0.1277105494 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
4 Hb_004987_070 0.1391216398 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
5 Hb_000300_120 0.1395116803 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
6 Hb_000069_320 0.1466186507 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
7 Hb_067776_020 0.1488109861 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_000057_050 0.155262557 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
9 Hb_005527_030 0.1555330546 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
10 Hb_003206_020 0.1557039321 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
11 Hb_000384_080 0.1559931513 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
12 Hb_000170_190 0.1587292298 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
13 Hb_011931_060 0.1600586132 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
14 Hb_048141_020 0.1600767092 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
15 Hb_005470_020 0.1622511345 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
16 Hb_023278_010 0.163146574 - - Chaperone protein DnaJ [Glycine soja]
17 Hb_006295_020 0.1641765088 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
18 Hb_001655_060 0.1643638213 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
19 Hb_002368_070 0.1670742255 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
20 Hb_003058_020 0.1674962364 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001009_100 Hb_001009_100 Hb_003388_030 Hb_003388_030 Hb_001009_100--Hb_003388_030 Hb_004884_020 Hb_004884_020 Hb_001009_100--Hb_004884_020 Hb_004987_070 Hb_004987_070 Hb_001009_100--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_001009_100--Hb_000300_120 Hb_000069_320 Hb_000069_320 Hb_001009_100--Hb_000069_320 Hb_067776_020 Hb_067776_020 Hb_001009_100--Hb_067776_020 Hb_003388_030--Hb_067776_020 Hb_000384_080 Hb_000384_080 Hb_003388_030--Hb_000384_080 Hb_003388_030--Hb_004987_070 Hb_003388_030--Hb_000300_120 Hb_005470_020 Hb_005470_020 Hb_003388_030--Hb_005470_020 Hb_004884_020--Hb_003388_030 Hb_003058_020 Hb_003058_020 Hb_004884_020--Hb_003058_020 Hb_004884_020--Hb_004987_070 Hb_004884_020--Hb_000384_080 Hb_001117_160 Hb_001117_160 Hb_004884_020--Hb_001117_160 Hb_004987_070--Hb_003058_020 Hb_000015_100 Hb_000015_100 Hb_004987_070--Hb_000015_100 Hb_004987_070--Hb_000384_080 Hb_004987_070--Hb_005470_020 Hb_000780_190 Hb_000780_190 Hb_004987_070--Hb_000780_190 Hb_000331_560 Hb_000331_560 Hb_000300_120--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_000300_120--Hb_018118_010 Hb_000041_090 Hb_000041_090 Hb_000300_120--Hb_000041_090 Hb_006295_020 Hb_006295_020 Hb_000300_120--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_000300_120--Hb_003203_030 Hb_000816_100 Hb_000816_100 Hb_000300_120--Hb_000816_100 Hb_005488_150 Hb_005488_150 Hb_000069_320--Hb_005488_150 Hb_000069_320--Hb_000041_090 Hb_148909_030 Hb_148909_030 Hb_000069_320--Hb_148909_030 Hb_000406_020 Hb_000406_020 Hb_000069_320--Hb_000406_020 Hb_000069_320--Hb_006295_020 Hb_001440_040 Hb_001440_040 Hb_000069_320--Hb_001440_040 Hb_000084_280 Hb_000084_280 Hb_067776_020--Hb_000084_280 Hb_067776_020--Hb_005470_020 Hb_000170_190 Hb_000170_190 Hb_067776_020--Hb_000170_190 Hb_067776_020--Hb_004987_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73625 1.7755 0.697415 0.778451 3.19662 4.28951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.736832 0.723432 0.46895 2.03055 4.63986

CAGE analysis