Hb_001009_110

Information

Type -
Description -
Location Contig1009: 67142-68062
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10390g
description POPTRDRAFT_575313; hypothetical protein
nr
ID XP_012079885.1
description PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IF68
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10390g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_110 0.0 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
2 Hb_002219_090 0.1033209676 - - protein kinase atmrk1, putative [Ricinus communis]
3 Hb_149056_010 0.1059478201 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
4 Hb_011214_140 0.112535208 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_000333_130 0.1147054823 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_118777_010 0.1176692001 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_009778_030 0.1184504765 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
8 Hb_001363_030 0.1208601291 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
9 Hb_017417_030 0.1237718507 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
10 Hb_011791_010 0.1250587714 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
11 Hb_001073_060 0.1307967731 - - phosphate transporter 1 [Hevea brasiliensis]
12 Hb_106969_010 0.1326686844 - - Cytochrome P450 76C4 [Glycine soja]
13 Hb_005054_300 0.1349415484 - - aquaporin [Hevea brasiliensis]
14 Hb_000345_190 0.1357543819 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
15 Hb_001013_010 0.1360610965 - - cytochrome P450, putative [Ricinus communis]
16 Hb_002783_300 0.1380539605 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000856_240 0.1453967415 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_152718_010 0.1460786231 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_135811_060 0.1461813852 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_000579_220 0.1487263467 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001009_110 Hb_001009_110 Hb_002219_090 Hb_002219_090 Hb_001009_110--Hb_002219_090 Hb_149056_010 Hb_149056_010 Hb_001009_110--Hb_149056_010 Hb_011214_140 Hb_011214_140 Hb_001009_110--Hb_011214_140 Hb_000333_130 Hb_000333_130 Hb_001009_110--Hb_000333_130 Hb_118777_010 Hb_118777_010 Hb_001009_110--Hb_118777_010 Hb_009778_030 Hb_009778_030 Hb_001009_110--Hb_009778_030 Hb_002219_090--Hb_149056_010 Hb_001073_060 Hb_001073_060 Hb_002219_090--Hb_001073_060 Hb_011791_010 Hb_011791_010 Hb_002219_090--Hb_011791_010 Hb_017417_030 Hb_017417_030 Hb_002219_090--Hb_017417_030 Hb_000676_030 Hb_000676_030 Hb_002219_090--Hb_000676_030 Hb_000856_240 Hb_000856_240 Hb_149056_010--Hb_000856_240 Hb_000579_220 Hb_000579_220 Hb_149056_010--Hb_000579_220 Hb_149056_010--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_149056_010--Hb_000123_310 Hb_000030_260 Hb_000030_260 Hb_011214_140--Hb_000030_260 Hb_000343_260 Hb_000343_260 Hb_011214_140--Hb_000343_260 Hb_000521_300 Hb_000521_300 Hb_011214_140--Hb_000521_300 Hb_000086_370 Hb_000086_370 Hb_011214_140--Hb_000086_370 Hb_006501_170 Hb_006501_170 Hb_011214_140--Hb_006501_170 Hb_106969_010 Hb_106969_010 Hb_000333_130--Hb_106969_010 Hb_000333_130--Hb_011791_010 Hb_000333_130--Hb_149056_010 Hb_000333_130--Hb_001073_060 Hb_000333_130--Hb_002219_090 Hb_003636_010 Hb_003636_010 Hb_118777_010--Hb_003636_010 Hb_003117_060 Hb_003117_060 Hb_118777_010--Hb_003117_060 Hb_152718_010 Hb_152718_010 Hb_118777_010--Hb_152718_010 Hb_001363_030 Hb_001363_030 Hb_118777_010--Hb_001363_030 Hb_118777_010--Hb_106969_010 Hb_000070_140 Hb_000070_140 Hb_118777_010--Hb_000070_140 Hb_000146_110 Hb_000146_110 Hb_009778_030--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_009778_030--Hb_000003_620 Hb_002890_060 Hb_002890_060 Hb_009778_030--Hb_002890_060 Hb_000111_130 Hb_000111_130 Hb_009778_030--Hb_000111_130 Hb_009778_030--Hb_000123_310 Hb_009778_030--Hb_001363_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0920655 42.8453 1.65074 5.22633 0.0737716 0.312296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0562063 0.0884048 0.485361 17.689 3.41476

CAGE analysis