Hb_001009_260

Information

Type -
Description -
Location Contig1009: 156174-161787
Sequence    

Annotation

kegg
ID rcu:RCOM_1507330
description Ubiquinone biosynthesis protein coq-8, putative
nr
ID XP_012079898.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
swissprot
ID Q5ZMT7
description Uncharacterized aarF domain-containing protein kinase 1 OS=Gallus gallus GN=ADCK1 PE=2 SV=1
trembl
ID B9RAM3
description Ubiquinone biosynthesis protein coq-8, putative OS=Ricinus communis GN=RCOM_1507330 PE=4 SV=1
Gene Ontology
ID GO:0004672
description uncharacterized aarf domain-containing protein kinase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00538: 159111-159293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_260 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
2 Hb_130589_010 0.0579682477 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_000120_860 0.0716910466 - - nucellin, putative [Ricinus communis]
4 Hb_002150_020 0.0725602575 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_005571_010 0.0849154404 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
6 Hb_004735_020 0.0861485537 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
7 Hb_000579_040 0.0948379723 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
8 Hb_003142_010 0.0951950026 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
9 Hb_016760_010 0.0971665726 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_001677_220 0.0977163064 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
11 Hb_032631_070 0.0978656198 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
12 Hb_007441_310 0.0989273886 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
13 Hb_000816_200 0.1000603165 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
14 Hb_055690_010 0.1000966673 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
15 Hb_004041_030 0.1016318873 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
16 Hb_023988_030 0.1036857312 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
17 Hb_003124_120 0.1042780623 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
18 Hb_000762_110 0.1042860674 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
19 Hb_004111_030 0.1049823398 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
20 Hb_010344_030 0.1062066692 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001009_260 Hb_001009_260 Hb_130589_010 Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_000120_860 Hb_000120_860 Hb_001009_260--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_130589_010--Hb_000120_860 Hb_130589_010--Hb_002150_020 Hb_000684_390 Hb_000684_390 Hb_130589_010--Hb_000684_390 Hb_130589_010--Hb_004735_020 Hb_000920_310 Hb_000920_310 Hb_130589_010--Hb_000920_310 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_030959_010 Hb_030959_010 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070 Hb_004041_030 Hb_004041_030 Hb_002150_020--Hb_004041_030 Hb_002150_020--Hb_005571_010 Hb_055690_010 Hb_055690_010 Hb_002150_020--Hb_055690_010 Hb_032631_070 Hb_032631_070 Hb_002150_020--Hb_032631_070 Hb_005305_020 Hb_005305_020 Hb_002150_020--Hb_005305_020 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_106890_010 Hb_106890_010 Hb_005571_010--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_005571_010--Hb_003355_010 Hb_005914_040 Hb_005914_040 Hb_005571_010--Hb_005914_040 Hb_005571_010--Hb_055690_010 Hb_004735_020--Hb_000120_860 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_000579_040--Hb_032631_070 Hb_025194_090 Hb_025194_090 Hb_000579_040--Hb_025194_090 Hb_002075_030 Hb_002075_030 Hb_000579_040--Hb_002075_030 Hb_138585_030 Hb_138585_030 Hb_000579_040--Hb_138585_030 Hb_001307_100 Hb_001307_100 Hb_000579_040--Hb_001307_100 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40889 2.2521 4.13863 4.93135 1.4433 1.93355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48109 1.24708 1.93131 2.72827 10.7582

CAGE analysis