Hb_001009_290

Information

Type -
Description -
Location Contig1009: 175419-183246
Sequence    

Annotation

kegg
ID rcu:RCOM_1507380
description Elongator complex protein, putative (EC:2.3.1.48)
nr
ID XP_011040426.1
description PREDICTED: elongator complex protein 3-like [Populus euphratica]
swissprot
ID Q93ZR1
description Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1
trembl
ID A0A067KGJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11350 PE=4 SV=1
Gene Ontology
ID GO:0032991
description elongator complex protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_290 0.0 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]
2 Hb_001522_010 0.1066423794 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
3 Hb_009558_040 0.1079402554 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
4 Hb_007885_070 0.1115307277 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
5 Hb_009178_020 0.1126055313 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
6 Hb_001529_060 0.1128383584 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
7 Hb_006829_090 0.1133372087 - - PREDICTED: protein MOS2 [Jatropha curcas]
8 Hb_000317_150 0.1133915294 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
9 Hb_003125_060 0.1168015695 - - PREDICTED: snurportin-1 [Jatropha curcas]
10 Hb_140049_020 0.1169768617 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
11 Hb_011512_060 0.1170101644 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
12 Hb_002652_040 0.1170124406 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
13 Hb_000313_340 0.1186550231 - - DNA repair protein xp-E, putative [Ricinus communis]
14 Hb_002675_040 0.11941212 - - ran-binding protein, putative [Ricinus communis]
15 Hb_000227_380 0.1196126652 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
16 Hb_001473_080 0.1202111851 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
17 Hb_000417_160 0.1205317579 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
18 Hb_003540_160 0.1208654353 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
19 Hb_002659_060 0.1210113494 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
20 Hb_005539_190 0.1217225338 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]

Gene co-expression network

sample Hb_001009_290 Hb_001009_290 Hb_001522_010 Hb_001522_010 Hb_001009_290--Hb_001522_010 Hb_009558_040 Hb_009558_040 Hb_001009_290--Hb_009558_040 Hb_007885_070 Hb_007885_070 Hb_001009_290--Hb_007885_070 Hb_009178_020 Hb_009178_020 Hb_001009_290--Hb_009178_020 Hb_001529_060 Hb_001529_060 Hb_001009_290--Hb_001529_060 Hb_006829_090 Hb_006829_090 Hb_001009_290--Hb_006829_090 Hb_002188_090 Hb_002188_090 Hb_001522_010--Hb_002188_090 Hb_001522_010--Hb_006829_090 Hb_078477_040 Hb_078477_040 Hb_001522_010--Hb_078477_040 Hb_005462_020 Hb_005462_020 Hb_001522_010--Hb_005462_020 Hb_000313_340 Hb_000313_340 Hb_001522_010--Hb_000313_340 Hb_011512_060 Hb_011512_060 Hb_009558_040--Hb_011512_060 Hb_000317_150 Hb_000317_150 Hb_009558_040--Hb_000317_150 Hb_027073_060 Hb_027073_060 Hb_009558_040--Hb_027073_060 Hb_002499_070 Hb_002499_070 Hb_009558_040--Hb_002499_070 Hb_009558_040--Hb_007885_070 Hb_003540_160 Hb_003540_160 Hb_009558_040--Hb_003540_160 Hb_002221_050 Hb_002221_050 Hb_007885_070--Hb_002221_050 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_007885_070--Hb_019153_020 Hb_000320_380 Hb_000320_380 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_000953_030 Hb_000953_030 Hb_009178_020--Hb_000953_030 Hb_001474_030 Hb_001474_030 Hb_009178_020--Hb_001474_030 Hb_001473_080 Hb_001473_080 Hb_009178_020--Hb_001473_080 Hb_000685_080 Hb_000685_080 Hb_009178_020--Hb_000685_080 Hb_000504_160 Hb_000504_160 Hb_009178_020--Hb_000504_160 Hb_000186_260 Hb_000186_260 Hb_009178_020--Hb_000186_260 Hb_001529_060--Hb_009178_020 Hb_001529_060--Hb_000685_080 Hb_002849_080 Hb_002849_080 Hb_001529_060--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001529_060--Hb_148209_020 Hb_001529_060--Hb_000317_150 Hb_006829_090--Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_006829_090--Hb_006002_030 Hb_000120_510 Hb_000120_510 Hb_006829_090--Hb_000120_510 Hb_001396_290 Hb_001396_290 Hb_006829_090--Hb_001396_290 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_006829_090--Hb_005462_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.86218 2.90472 1.35479 0.51059 7.1077 3.47702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40984 1.18578 1.448 2.64966 1.16976

CAGE analysis