Hb_001009_300

Information

Type transcription factor
Description TF Family: GNAT
Location Contig1009: 191776-195658
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09430g
description POPTRDRAFT_570202; hypothetical protein
nr
ID XP_012471741.1
description PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
swissprot
ID Q93ZR1
description Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1
trembl
ID A0A0D2RN71
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G153300 PE=4 SV=1
Gene Ontology
ID GO:0005719
description elongator complex protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00546: 194876-195577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_300 0.0 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
2 Hb_000086_550 0.0866651916 - - Os02g0814700 [Oryza sativa Japonica Group]
3 Hb_005400_030 0.0915169468 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
4 Hb_003623_050 0.0920410499 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001421_060 0.0939366005 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
6 Hb_005615_080 0.094414615 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
7 Hb_001117_090 0.0954026007 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
8 Hb_004800_120 0.0964931284 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
9 Hb_148209_080 0.0968212567 - - MED32, putative [Theobroma cacao]
10 Hb_004032_100 0.0968897165 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
11 Hb_005997_010 0.0971482535 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
12 Hb_005398_030 0.0981343727 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
13 Hb_000103_090 0.1008705891 - - PREDICTED: protein RDM1 [Jatropha curcas]
14 Hb_010423_040 0.1011901915 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
15 Hb_000030_220 0.1046022027 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
16 Hb_020000_010 0.1047906352 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
17 Hb_000840_190 0.1048440336 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
18 Hb_002701_240 0.1057240069 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
19 Hb_005357_130 0.1057395939 - - hypothetical protein L484_012905 [Morus notabilis]
20 Hb_000340_140 0.1065227467 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]

Gene co-expression network

sample Hb_001009_300 Hb_001009_300 Hb_000086_550 Hb_000086_550 Hb_001009_300--Hb_000086_550 Hb_005400_030 Hb_005400_030 Hb_001009_300--Hb_005400_030 Hb_003623_050 Hb_003623_050 Hb_001009_300--Hb_003623_050 Hb_001421_060 Hb_001421_060 Hb_001009_300--Hb_001421_060 Hb_005615_080 Hb_005615_080 Hb_001009_300--Hb_005615_080 Hb_001117_090 Hb_001117_090 Hb_001009_300--Hb_001117_090 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_005400_030--Hb_004032_100 Hb_007735_030 Hb_007735_030 Hb_005400_030--Hb_007735_030 Hb_000152_550 Hb_000152_550 Hb_005400_030--Hb_000152_550 Hb_005400_030--Hb_000086_550 Hb_000024_080 Hb_000024_080 Hb_005400_030--Hb_000024_080 Hb_148209_080 Hb_148209_080 Hb_005400_030--Hb_148209_080 Hb_000136_170 Hb_000136_170 Hb_003623_050--Hb_000136_170 Hb_003623_050--Hb_005357_130 Hb_026048_070 Hb_026048_070 Hb_003623_050--Hb_026048_070 Hb_003623_050--Hb_000086_550 Hb_011644_030 Hb_011644_030 Hb_003623_050--Hb_011644_030 Hb_001505_020 Hb_001505_020 Hb_003623_050--Hb_001505_020 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_010423_040 Hb_010423_040 Hb_005615_080--Hb_010423_040 Hb_002260_150 Hb_002260_150 Hb_005615_080--Hb_002260_150 Hb_002296_040 Hb_002296_040 Hb_005615_080--Hb_002296_040 Hb_021238_050 Hb_021238_050 Hb_005615_080--Hb_021238_050 Hb_000003_730 Hb_000003_730 Hb_005615_080--Hb_000003_730 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_001117_090--Hb_003599_040 Hb_000877_020 Hb_000877_020 Hb_001117_090--Hb_000877_020 Hb_001117_090--Hb_000340_140 Hb_009421_040 Hb_009421_040 Hb_001117_090--Hb_009421_040 Hb_001246_060 Hb_001246_060 Hb_001117_090--Hb_001246_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41495 1.23494 0.893624 2.6246 3.61214 8.21205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.28386 10.0329 3.89861 4.37624 2.78989

CAGE analysis