Hb_001010_070

Information

Type -
Description -
Location Contig1010: 48861-51036
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024601mg
description hypothetical protein
nr
ID XP_012085001.1
description PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K582
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22194 PE=4 SV=1
Gene Ontology
ID GO:0005488
description carboxymethylenebutenolidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001010_070 0.0 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
2 Hb_020665_010 0.1133271101 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
3 Hb_000684_440 0.1268236606 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
4 Hb_002304_070 0.1307501503 - - -
5 Hb_009270_010 0.1373433302 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
6 Hb_002419_030 0.1471233117 - - -
7 Hb_008447_040 0.1546259339 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
8 Hb_012627_020 0.161050237 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
9 Hb_001117_170 0.1613856603 - - -
10 Hb_003206_020 0.1621031889 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
11 Hb_001863_500 0.1643084512 - - Protein brittle-1, chloroplast precursor, putative [Ricinus communis]
12 Hb_007922_020 0.1651502083 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
13 Hb_000062_450 0.1677074009 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
14 Hb_000111_420 0.1687345807 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
15 Hb_004448_090 0.1704520845 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
16 Hb_007317_140 0.1713039243 - - expressed protein, putative [Ricinus communis]
17 Hb_001005_050 0.1718172716 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
18 Hb_007023_030 0.1752077298 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
19 Hb_002188_120 0.1754235274 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
20 Hb_007805_010 0.1754426499 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001010_070 Hb_001010_070 Hb_020665_010 Hb_020665_010 Hb_001010_070--Hb_020665_010 Hb_000684_440 Hb_000684_440 Hb_001010_070--Hb_000684_440 Hb_002304_070 Hb_002304_070 Hb_001010_070--Hb_002304_070 Hb_009270_010 Hb_009270_010 Hb_001010_070--Hb_009270_010 Hb_002419_030 Hb_002419_030 Hb_001010_070--Hb_002419_030 Hb_008447_040 Hb_008447_040 Hb_001010_070--Hb_008447_040 Hb_145915_010 Hb_145915_010 Hb_020665_010--Hb_145915_010 Hb_020665_010--Hb_009270_010 Hb_007922_020 Hb_007922_020 Hb_020665_010--Hb_007922_020 Hb_007317_140 Hb_007317_140 Hb_020665_010--Hb_007317_140 Hb_001005_050 Hb_001005_050 Hb_020665_010--Hb_001005_050 Hb_000684_440--Hb_002304_070 Hb_012627_020 Hb_012627_020 Hb_000684_440--Hb_012627_020 Hb_000346_040 Hb_000346_040 Hb_000684_440--Hb_000346_040 Hb_000684_440--Hb_020665_010 Hb_004020_020 Hb_004020_020 Hb_000684_440--Hb_004020_020 Hb_003467_030 Hb_003467_030 Hb_002304_070--Hb_003467_030 Hb_011386_020 Hb_011386_020 Hb_002304_070--Hb_011386_020 Hb_002338_050 Hb_002338_050 Hb_002304_070--Hb_002338_050 Hb_001595_080 Hb_001595_080 Hb_002304_070--Hb_001595_080 Hb_007023_030 Hb_007023_030 Hb_002304_070--Hb_007023_030 Hb_001117_170 Hb_001117_170 Hb_009270_010--Hb_001117_170 Hb_000005_190 Hb_000005_190 Hb_009270_010--Hb_000005_190 Hb_009270_010--Hb_145915_010 Hb_188126_010 Hb_188126_010 Hb_009270_010--Hb_188126_010 Hb_003498_130 Hb_003498_130 Hb_009270_010--Hb_003498_130 Hb_002419_030--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_002419_030--Hb_000136_040 Hb_004448_090 Hb_004448_090 Hb_002419_030--Hb_004448_090 Hb_000470_080 Hb_000470_080 Hb_002419_030--Hb_000470_080 Hb_003206_020 Hb_003206_020 Hb_002419_030--Hb_003206_020 Hb_127552_060 Hb_127552_060 Hb_008447_040--Hb_127552_060 Hb_008447_040--Hb_004448_090 Hb_008447_040--Hb_007023_030 Hb_000429_150 Hb_000429_150 Hb_008447_040--Hb_000429_150 Hb_000236_310 Hb_000236_310 Hb_008447_040--Hb_000236_310 Hb_002414_060 Hb_002414_060 Hb_008447_040--Hb_002414_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51317 1.52999 1.07565 1.80734 3.73133 9.44923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13965 3.45271 5.22046 7.15222 9.73905

CAGE analysis