Hb_001012_020

Information

Type transcription factor
Description TF Family: M-type
Location Contig1012: 28579-28770
Sequence    

Annotation

kegg
ID mtr:MTR_2g009840
description MADS-box family transcription factor
nr
ID CDP00946.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9M2K8
description Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1
trembl
ID A0A068TXG0
description Coffea canephora DH200=94 genomic scaffold, scaffold_6 OS=Coffea canephora GN=GSCOC_T00034405001 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box transcription factor 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001012_020 0.0 transcription factor TF Family: M-type unnamed protein product [Coffea canephora]
2 Hb_005935_010 0.2032946324 - - -
3 Hb_157568_010 0.2229610207 - - MATE efflux family protein, putative [Theobroma cacao]
4 Hb_001221_510 0.2239308095 - - Protein HVA22, putative [Ricinus communis]
5 Hb_135403_010 0.2333178494 - - HEV1.1 [Hevea brasiliensis]
6 Hb_123202_010 0.2334748415 - - thioredoxin h [Hevea brasiliensis]
7 Hb_002671_080 0.2392381913 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
8 Hb_002626_020 0.2446230454 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
9 Hb_002687_050 0.2513161406 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
10 Hb_134789_010 0.2540920319 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
11 Hb_145226_010 0.255061502 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
12 Hb_068946_010 0.2576457702 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
13 Hb_173866_010 0.2578344307 - - -
14 Hb_061581_010 0.2588728496 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
15 Hb_001310_070 0.2605503763 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
16 Hb_111648_010 0.2620753397 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
17 Hb_000491_090 0.2634334233 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
18 Hb_121236_010 0.2645915758 - - geranyl-diphosphate synthase [Hevea brasiliensis]
19 Hb_008725_200 0.2647318786 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
20 Hb_013483_010 0.2662844274 - - -

Gene co-expression network

sample Hb_001012_020 Hb_001012_020 Hb_005935_010 Hb_005935_010 Hb_001012_020--Hb_005935_010 Hb_157568_010 Hb_157568_010 Hb_001012_020--Hb_157568_010 Hb_001221_510 Hb_001221_510 Hb_001012_020--Hb_001221_510 Hb_135403_010 Hb_135403_010 Hb_001012_020--Hb_135403_010 Hb_123202_010 Hb_123202_010 Hb_001012_020--Hb_123202_010 Hb_002671_080 Hb_002671_080 Hb_001012_020--Hb_002671_080 Hb_002626_020 Hb_002626_020 Hb_005935_010--Hb_002626_020 Hb_068946_010 Hb_068946_010 Hb_005935_010--Hb_068946_010 Hb_002687_050 Hb_002687_050 Hb_005935_010--Hb_002687_050 Hb_002400_090 Hb_002400_090 Hb_005935_010--Hb_002400_090 Hb_005935_010--Hb_123202_010 Hb_008725_200 Hb_008725_200 Hb_005935_010--Hb_008725_200 Hb_111648_010 Hb_111648_010 Hb_157568_010--Hb_111648_010 Hb_001514_180 Hb_001514_180 Hb_157568_010--Hb_001514_180 Hb_000442_030 Hb_000442_030 Hb_157568_010--Hb_000442_030 Hb_024505_040 Hb_024505_040 Hb_157568_010--Hb_024505_040 Hb_157568_010--Hb_001221_510 Hb_116264_010 Hb_116264_010 Hb_001221_510--Hb_116264_010 Hb_000491_090 Hb_000491_090 Hb_001221_510--Hb_000491_090 Hb_001221_510--Hb_111648_010 Hb_001396_220 Hb_001396_220 Hb_001221_510--Hb_001396_220 Hb_004448_020 Hb_004448_020 Hb_001221_510--Hb_004448_020 Hb_000048_050 Hb_000048_050 Hb_001221_510--Hb_000048_050 Hb_061581_010 Hb_061581_010 Hb_135403_010--Hb_061581_010 Hb_121236_010 Hb_121236_010 Hb_135403_010--Hb_121236_010 Hb_001488_110 Hb_001488_110 Hb_135403_010--Hb_001488_110 Hb_001095_060 Hb_001095_060 Hb_135403_010--Hb_001095_060 Hb_000122_030 Hb_000122_030 Hb_135403_010--Hb_000122_030 Hb_115919_010 Hb_115919_010 Hb_135403_010--Hb_115919_010 Hb_000453_260 Hb_000453_260 Hb_123202_010--Hb_000453_260 Hb_010298_010 Hb_010298_010 Hb_123202_010--Hb_010298_010 Hb_000329_770 Hb_000329_770 Hb_123202_010--Hb_000329_770 Hb_006602_010 Hb_006602_010 Hb_123202_010--Hb_006602_010 Hb_004735_010 Hb_004735_010 Hb_123202_010--Hb_004735_010 Hb_005965_010 Hb_005965_010 Hb_123202_010--Hb_005965_010 Hb_102156_010 Hb_102156_010 Hb_002671_080--Hb_102156_010 Hb_023226_010 Hb_023226_010 Hb_002671_080--Hb_023226_010 Hb_001057_050 Hb_001057_050 Hb_002671_080--Hb_001057_050 Hb_000608_180 Hb_000608_180 Hb_002671_080--Hb_000608_180 Hb_002259_150 Hb_002259_150 Hb_002671_080--Hb_002259_150 Hb_015057_010 Hb_015057_010 Hb_002671_080--Hb_015057_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.55575 2.55792 0 0 2.29362 45.083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3575 11.5989 21.5033 1.32135 0

CAGE analysis