Hb_001013_030

Information

Type -
Description -
Location Contig1013: 24063-30717
Sequence    

Annotation

kegg
ID rcu:RCOM_0425560
description GTP-binding protein yptv3, putative
nr
ID XP_002533618.1
description GTP-binding protein yptv3, putative [Ricinus communis]
swissprot
ID Q9C5J9
description Uncharacterized GTP-binding protein At5g64813 OS=Arabidopsis thaliana GN=At5g64813 PE=1 SV=1
trembl
ID B9T5U9
description GTP-binding protein yptv3, putative OS=Ricinus communis GN=RCOM_0425560 PE=4 SV=1
Gene Ontology
ID GO:0005525
description uncharacterized gtp-binding protein at5g64813-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00663: 24087-30597 , PASA_asmbl_00664: 25251-25742 , PASA_asmbl_00665: 24087-29774 , PASA_asmbl_00667: 26068-26195 , PASA_asmbl_00668: 26399-26595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001013_030 0.0 - - GTP-binding protein yptv3, putative [Ricinus communis]
2 Hb_009339_030 0.0604607304 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
3 Hb_000733_180 0.0668419346 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
4 Hb_000436_130 0.0725645469 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
5 Hb_005765_050 0.0799479922 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
6 Hb_004889_020 0.0853525571 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
7 Hb_000676_390 0.0891178946 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
8 Hb_148121_040 0.0906286866 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_026889_030 0.0908000683 - - protein with unknown function [Ricinus communis]
10 Hb_006326_040 0.0920566928 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000827_050 0.0935481138 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
12 Hb_000221_190 0.094808407 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
13 Hb_004162_130 0.0949824746 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000928_070 0.0953649884 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
15 Hb_000608_050 0.0965858796 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
16 Hb_000505_130 0.096621167 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
17 Hb_024439_010 0.0971229389 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
18 Hb_050514_010 0.0972971348 - - hypothetical protein 29 [Hevea brasiliensis]
19 Hb_000288_030 0.0975190012 - - PREDICTED: syntaxin-32 [Jatropha curcas]
20 Hb_000309_130 0.0975789056 - - hypothetical protein JCGZ_09592 [Jatropha curcas]

Gene co-expression network

sample Hb_001013_030 Hb_001013_030 Hb_009339_030 Hb_009339_030 Hb_001013_030--Hb_009339_030 Hb_000733_180 Hb_000733_180 Hb_001013_030--Hb_000733_180 Hb_000436_130 Hb_000436_130 Hb_001013_030--Hb_000436_130 Hb_005765_050 Hb_005765_050 Hb_001013_030--Hb_005765_050 Hb_004889_020 Hb_004889_020 Hb_001013_030--Hb_004889_020 Hb_000676_390 Hb_000676_390 Hb_001013_030--Hb_000676_390 Hb_009339_030--Hb_000436_130 Hb_000288_030 Hb_000288_030 Hb_009339_030--Hb_000288_030 Hb_050514_010 Hb_050514_010 Hb_009339_030--Hb_050514_010 Hb_007416_060 Hb_007416_060 Hb_009339_030--Hb_007416_060 Hb_000827_050 Hb_000827_050 Hb_009339_030--Hb_000827_050 Hb_000309_130 Hb_000309_130 Hb_000733_180--Hb_000309_130 Hb_000733_180--Hb_000436_130 Hb_000928_070 Hb_000928_070 Hb_000733_180--Hb_000928_070 Hb_002677_020 Hb_002677_020 Hb_000733_180--Hb_002677_020 Hb_003124_150 Hb_003124_150 Hb_000733_180--Hb_003124_150 Hb_010883_050 Hb_010883_050 Hb_000436_130--Hb_010883_050 Hb_003697_040 Hb_003697_040 Hb_000436_130--Hb_003697_040 Hb_003053_020 Hb_003053_020 Hb_000436_130--Hb_003053_020 Hb_000173_410 Hb_000173_410 Hb_005765_050--Hb_000173_410 Hb_000608_050 Hb_000608_050 Hb_005765_050--Hb_000608_050 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_000454_090 Hb_000454_090 Hb_005765_050--Hb_000454_090 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_004078_040 Hb_004078_040 Hb_005765_050--Hb_004078_040 Hb_026889_030 Hb_026889_030 Hb_004889_020--Hb_026889_030 Hb_004157_020 Hb_004157_020 Hb_004889_020--Hb_004157_020 Hb_006326_040 Hb_006326_040 Hb_004889_020--Hb_006326_040 Hb_157022_010 Hb_157022_010 Hb_004889_020--Hb_157022_010 Hb_004889_020--Hb_000676_390 Hb_008071_020 Hb_008071_020 Hb_004889_020--Hb_008071_020 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_000676_390--Hb_008071_020 Hb_000676_390--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40915 9.54484 19.37 20.6838 8.18049 11.7009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0036 30.9244 30.4369 9.76214 14.4163

CAGE analysis