Hb_001013_040

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1013: 31941-35426
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06720g
description POPTRDRAFT_562724; hypothetical protein
nr
ID XP_012075251.1
description PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
swissprot
ID Q93WU9
description Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=1 SV=1
trembl
ID S5CKE4
description Uncharacterized protein OS=Jatropha curcas GN=WRKY12 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00669: 32092-34793 , PASA_asmbl_00670: 34818-35318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001013_040 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
2 Hb_001856_060 0.076400104 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_000381_030 0.1020860268 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
4 Hb_007875_070 0.1029639381 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
5 Hb_001331_040 0.1054929067 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
6 Hb_012019_020 0.1066998925 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
7 Hb_002171_070 0.1083742134 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
8 Hb_000411_060 0.1181730053 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_000254_040 0.121813335 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
10 Hb_001596_040 0.1297341375 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
11 Hb_110218_010 0.136137034 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
12 Hb_000101_050 0.1369045604 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_002542_090 0.1377948673 - - Potassium transporter, putative [Ricinus communis]
14 Hb_008080_040 0.1381065799 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
15 Hb_006919_010 0.1383444699 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
16 Hb_008080_050 0.1433352559 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_006949_030 0.1447272429 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_000010_200 0.1454752728 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_006938_010 0.1470927247 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
20 Hb_006452_050 0.1473807943 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001013_040 Hb_001013_040 Hb_001856_060 Hb_001856_060 Hb_001013_040--Hb_001856_060 Hb_000381_030 Hb_000381_030 Hb_001013_040--Hb_000381_030 Hb_007875_070 Hb_007875_070 Hb_001013_040--Hb_007875_070 Hb_001331_040 Hb_001331_040 Hb_001013_040--Hb_001331_040 Hb_012019_020 Hb_012019_020 Hb_001013_040--Hb_012019_020 Hb_002171_070 Hb_002171_070 Hb_001013_040--Hb_002171_070 Hb_008080_050 Hb_008080_050 Hb_001856_060--Hb_008080_050 Hb_114025_010 Hb_114025_010 Hb_001856_060--Hb_114025_010 Hb_002435_080 Hb_002435_080 Hb_001856_060--Hb_002435_080 Hb_001856_060--Hb_001331_040 Hb_000411_060 Hb_000411_060 Hb_001856_060--Hb_000411_060 Hb_000381_030--Hb_001331_040 Hb_006949_030 Hb_006949_030 Hb_000381_030--Hb_006949_030 Hb_006938_010 Hb_006938_010 Hb_000381_030--Hb_006938_010 Hb_000010_200 Hb_000010_200 Hb_000381_030--Hb_000010_200 Hb_007894_260 Hb_007894_260 Hb_000381_030--Hb_007894_260 Hb_008225_080 Hb_008225_080 Hb_007875_070--Hb_008225_080 Hb_000976_020 Hb_000976_020 Hb_007875_070--Hb_000976_020 Hb_000758_030 Hb_000758_030 Hb_007875_070--Hb_000758_030 Hb_008080_040 Hb_008080_040 Hb_007875_070--Hb_008080_040 Hb_007875_070--Hb_000381_030 Hb_001331_040--Hb_006949_030 Hb_001331_040--Hb_006938_010 Hb_001331_040--Hb_000010_200 Hb_005010_040 Hb_005010_040 Hb_001331_040--Hb_005010_040 Hb_001596_040 Hb_001596_040 Hb_012019_020--Hb_001596_040 Hb_000101_050 Hb_000101_050 Hb_012019_020--Hb_000101_050 Hb_001952_110 Hb_001952_110 Hb_012019_020--Hb_001952_110 Hb_012019_020--Hb_007875_070 Hb_006452_050 Hb_006452_050 Hb_012019_020--Hb_006452_050 Hb_002171_070--Hb_001596_040 Hb_002171_070--Hb_012019_020 Hb_000556_200 Hb_000556_200 Hb_002171_070--Hb_000556_200 Hb_000462_020 Hb_000462_020 Hb_002171_070--Hb_000462_020 Hb_002269_030 Hb_002269_030 Hb_002171_070--Hb_002269_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1111 9.39009 3.14702 0.734544 0 0.0163082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.100026 0 26.2102 1.79033

CAGE analysis