Hb_001013_050

Information

Type -
Description -
Location Contig1013: 73536-79293
Sequence    

Annotation

kegg
ID cic:CICLE_v10011544mg
description hypothetical protein
nr
ID CDP11888.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q40284
description Anthocyanidin 3-O-glucosyltransferase 1 OS=Manihot esculenta GN=GT1 PE=2 SV=1
trembl
ID A0A068UW89
description Coffea canephora DH200=94 genomic scaffold, scaffold_60 OS=Coffea canephora GN=GSCOC_T00035173001 PE=3 SV=1
Gene Ontology
ID GO:0016758
description anthocyanidin 3-o-glucosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00672: 76910-78309
cDNA
(Sanger)
(ID:Location)		 022_F03.ab1: 80039-80676

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001013_050 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_003835_030 0.0767807617 - - glycosyltransferase, partial [Arabidopsis thaliana]
3 Hb_008092_020 0.0858240165 - - transcription factor, putative [Ricinus communis]
4 Hb_000589_330 0.0871399291 - - kinase, putative [Ricinus communis]
5 Hb_000472_020 0.0932367011 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
6 Hb_000613_250 0.1025477634 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
7 Hb_002097_130 0.1042226591 - - tonoplast intrinsic protein [Hevea brasiliensis]
8 Hb_001269_530 0.1080878372 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_007007_090 0.109836662 - - phospholipase d beta, putative [Ricinus communis]
10 Hb_002510_100 0.1105469913 - - Root phototropism protein, putative [Ricinus communis]
11 Hb_001913_030 0.1160643358 - - ankyrin repeat protein [Bruguiera gymnorhiza]
12 Hb_005074_010 0.1172282338 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
13 Hb_005034_010 0.1190119474 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_003562_040 0.1192408902 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
15 Hb_028928_020 0.11974838 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
16 Hb_005271_180 0.1200555979 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
17 Hb_174101_010 0.1200694693 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
18 Hb_000477_110 0.1216071394 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
19 Hb_144703_010 0.1220040161 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
20 Hb_002375_080 0.1245472177 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001013_050 Hb_001013_050 Hb_003835_030 Hb_003835_030 Hb_001013_050--Hb_003835_030 Hb_008092_020 Hb_008092_020 Hb_001013_050--Hb_008092_020 Hb_000589_330 Hb_000589_330 Hb_001013_050--Hb_000589_330 Hb_000472_020 Hb_000472_020 Hb_001013_050--Hb_000472_020 Hb_000613_250 Hb_000613_250 Hb_001013_050--Hb_000613_250 Hb_002097_130 Hb_002097_130 Hb_001013_050--Hb_002097_130 Hb_003835_030--Hb_008092_020 Hb_002000_130 Hb_002000_130 Hb_003835_030--Hb_002000_130 Hb_003835_030--Hb_000589_330 Hb_005034_010 Hb_005034_010 Hb_003835_030--Hb_005034_010 Hb_003835_030--Hb_000472_020 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_000028_460 Hb_000028_460 Hb_008092_020--Hb_000028_460 Hb_008092_020--Hb_002000_130 Hb_008092_020--Hb_000472_020 Hb_007007_090 Hb_007007_090 Hb_000589_330--Hb_007007_090 Hb_001913_030 Hb_001913_030 Hb_000589_330--Hb_001913_030 Hb_000589_330--Hb_002097_130 Hb_001269_530 Hb_001269_530 Hb_000589_330--Hb_001269_530 Hb_001544_070 Hb_001544_070 Hb_000472_020--Hb_001544_070 Hb_000472_020--Hb_000613_250 Hb_001174_030 Hb_001174_030 Hb_000472_020--Hb_001174_030 Hb_144703_010 Hb_144703_010 Hb_000472_020--Hb_144703_010 Hb_000472_020--Hb_174101_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020 Hb_000613_250--Hb_000342_020 Hb_004421_010 Hb_004421_010 Hb_000613_250--Hb_004421_010 Hb_000477_110 Hb_000477_110 Hb_000613_250--Hb_000477_110 Hb_000613_250--Hb_144703_010 Hb_028928_020 Hb_028928_020 Hb_002097_130--Hb_028928_020 Hb_033187_020 Hb_033187_020 Hb_002097_130--Hb_033187_020 Hb_003849_200 Hb_003849_200 Hb_002097_130--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_002097_130--Hb_003435_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408639 35.391 13.4731 30.775 0.739545 0.659444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136774 0.0269067 0.025663 12.2153 20.346

CAGE analysis